; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022757 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022757
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionExonuclease domain-containing protein
Genome locationscaffold73:266275..267594
RNA-Seq ExpressionMS022757
SyntenyMS022757
Gene Ontology termsGO:0000738 - DNA catabolic process, exonucleolytic (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008296 - 3'-5'-exodeoxyribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR040393 - Three-prime repair exonuclease 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590475.1 Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.8e-15584.34Show/hide
Query:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
        MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQ+KRWTRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCTVS
Subjt:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS

Query:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
        INK+EK+ TQKLQ C+IQ+T  K+KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++VHGITSRMVSRPDVPRMK+L
Subjt:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL

Query:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
        IPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRCS DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Subjt:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL

Query:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
        ILQRLTFDLKL IPDLIERSFT SDLI K K+
Subjt:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD

XP_022135594.1 exonuclease DPD1, chloroplastic/mitochondrial [Momordica charantia]2.3e-18499.7Show/hide
Query:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
        MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
Subjt:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS

Query:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
        INKTEKSETQKLQYCDIQQTFTK KELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
Subjt:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL

Query:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
        IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
Subjt:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL

Query:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
        ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
Subjt:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD

XP_022961373.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata]1.4e-15484.04Show/hide
Query:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
        MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FR YNLEGGQ+KRWTRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCTVS
Subjt:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS

Query:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
        INK+EK+ TQKLQ C+IQ+T  K+KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++VHGITSRMVSRPDVPRMK+L
Subjt:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL

Query:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
        IPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRCS DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Subjt:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL

Query:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
        ILQRLTFDLKL IPDLIERSFT SDLI K K+
Subjt:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD

XP_022968752.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima]4.2e-15484.89Show/hide
Query:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
        MIT  MCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQ+KRWTRKS+TTKAGRK K NPSSKPS+IRNEILE SVSTSCTVS
Subjt:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS

Query:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
        INK+EK  TQKLQ C+IQ+T  K+KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++VHGITSRMVSRPDVPRMK+L
Subjt:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL

Query:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
        IPILLQFV SRQKPDGY+LLVAHNAR FDVPFLL EFSRCS DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Subjt:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL

Query:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNK
        ILQRLTFDLKL IPDLIERSFT SDLI K K
Subjt:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNK

XP_023515555.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]4.5e-15684.64Show/hide
Query:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
        MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQNKRWTRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCT+S
Subjt:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS

Query:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
        INK+EK+ TQKLQ C+IQ+T TK+KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++VHGITSRMVSRPDVPRMK+L
Subjt:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL

Query:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
        IPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRCS DIP +WLF DN++LARQLM S+DSK+ KISLQALREYY+IPLVGSAHRAMSDV +LSL
Subjt:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL

Query:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
        ILQRLTFDLKL IPDLIERSFT SDLI K K+
Subjt:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD

TrEMBL top hitse value%identityAlignment
A0A0A0LVY3 Exonuclease domain-containing protein4.7e-13575.46Show/hide
Query:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE
        MC SI R PK+GV  LAN WR NFHPLNRN+GH+ WYDQLCFRIYNLEGG+NKRWTRKSITTKAG K K NPSSKP++IRNEIL+ S+  SCTV+INK+E
Subjt:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE

Query:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDLIPILL
        KSETQKLQYCDIQ T  K+KE    VTVI FDIETTGFSR  DRIVEIAFQDLSGGENSTFQTLINP+CYI NS +HGI++RMV  P VPRM++LIPI+L
Subjt:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDLIPILL

Query:  QFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL
        QFV SRQKP GY+LLVAHNARTFDVPFLL+EFSR S DIP +WLF D M LARQLM  SDSK++KI+LQAL EYY I L G AHRA+SDV  LS ILQRL
Subjt:  QFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL

Query:  TFDLKLEIPDLIERSFTASDLIKKNK
        TFDLKL+I DL+ER+FT  DLI K K
Subjt:  TFDLKLEIPDLIERSFTASDLIKKNK

A0A1S4DY73 exonuclease DPD1, chloroplastic/mitochondrial2.3e-13776.38Show/hide
Query:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE
        MCFSI R PKFGV  LAN WR NFHPLNRN+GHS WYDQLCFRIYNLEGGQNKRWTRKSITTKAG K K NPSSKP++I NEIL+ S+S SCTV++NK+E
Subjt:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE

Query:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDLIPILL
        KS TQKLQYCDIQ T  K+KE   PVTVI FDIETTGFSR  DRIVEIAFQDLSGGENSTFQTLI+P+CYI NS +HGIT+ MV+   VPRM++LIPI+L
Subjt:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDLIPILL

Query:  QFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL
        QFV SRQKP GY+LLVAHNARTFDVPFLL+EFSR S DIPQDWLFLD M LARQLM  SDSK++KISL+AL EYY I + G AHRA+ DV+SLSLILQRL
Subjt:  QFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL

Query:  TFDLKLEIPDLIERSFTASDLIKKNK
        TFDLKL++ DL+ER+FT  DLI K K
Subjt:  TFDLKLEIPDLIERSFTASDLIKKNK

A0A6J1C1V8 exonuclease DPD1, chloroplastic/mitochondrial1.1e-18499.7Show/hide
Query:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
        MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
Subjt:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS

Query:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
        INKTEKSETQKLQYCDIQQTFTK KELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
Subjt:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL

Query:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
        IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
Subjt:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL

Query:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
        ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
Subjt:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD

A0A6J1HDU6 exonuclease DPD1, chloroplastic/mitochondrial7.0e-15584.04Show/hide
Query:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
        MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FR YNLEGGQ+KRWTRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCTVS
Subjt:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS

Query:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
        INK+EK+ TQKLQ C+IQ+T  K+KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++VHGITSRMVSRPDVPRMK+L
Subjt:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL

Query:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
        IPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRCS DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Subjt:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL

Query:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD
        ILQRLTFDLKL IPDLIERSFT SDLI K K+
Subjt:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD

A0A6J1HUD7 exonuclease DPD1, chloroplastic/mitochondrial2.0e-15484.89Show/hide
Query:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS
        MIT  MCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQ+KRWTRKS+TTKAGRK K NPSSKPS+IRNEILE SVSTSCTVS
Subjt:  MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVS

Query:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL
        INK+EK  TQKLQ C+IQ+T  K+KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++VHGITSRMVSRPDVPRMK+L
Subjt:  INKTEKSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDL

Query:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL
        IPILLQFV SRQKPDGY+LLVAHNAR FDVPFLL EFSRCS DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Subjt:  IPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL

Query:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNK
        ILQRLTFDLKL IPDLIERSFT SDLI K K
Subjt:  ILQRLTFDLKLEIPDLIERSFTASDLIKKNK

SwissProt top hitse value%identityAlignment
Q682U6 Exonuclease DPD1, chloroplastic/mitochondrial2.1e-6343.98Show/hide
Query:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE
        MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R++++T       N  SS        +L G+V  +  +     E
Subjt:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE

Query:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL
        +S T+   + ++QQ   ++K+L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI + MV RP+VPRM++LIPI 
Subjt:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL

Query:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL
        L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++IP +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Subjt:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL

Query:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK
        Q+LT DLKL + DL+ R  TASD+   + KNK
Subjt:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK

Q895K2 DNA polymerase III PolC-type4.9e-1231.68Show/hide
Query:  IAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDV
        + FDIETTGFS K D+I+EI    +  G+    + T +NPE  IP  ++   GI   MV   D P++++++P  + F+          +LVAHNA  FDV
Subjt:  IAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDV

Query:  PFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRLTFDLK----LEIPDLIERSFTASDL
         F+        F I  +   LD + L + L      +L +  L  + ++  IPL+ + HRA+ D  +   IL +   DLK    + +  L E  F   D+
Subjt:  PFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRLTFDLK----LEIPDLIERSFTASDL

Query:  IK
         K
Subjt:  IK

Q8EQU6 DNA polymerase III PolC-type7.3e-0831.07Show/hide
Query:  TVIAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTF
        T + FD+ETTG S   D I+E+A   + GGE    F++  NP   +  + +   GIT  MV+  D P + D++     ++       G  +LVAHNA +F
Subjt:  TVIAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTF

Query:  DVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL
        D+ FL   F R  ++   + + +D + LAR L+     +L    L  L ++  I L    HRA+ D  +   +L +L
Subjt:  DVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL

Q8RA32 DNA polymerase III PolC-type8.6e-0929.71Show/hide
Query:  IAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSL--VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDV
        + FDIETTG S   D I+EI    +   +   TF+T +NP+  I + +  + GI   MV   D P +++++P  L+F           +LVAHNA  FDV
Subjt:  IAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSL--VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDV

Query:  PFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL
         F+ ++  +    +      LD + L+R L       L    L  L E++ + L+   HRA+ D  + + I  ++
Subjt:  PFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRL

Q8XJR3 DNA polymerase III PolC-type2.0e-1032.95Show/hide
Query:  IAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDV
        + FDIETTGFS K D+I+EI    L  GE   +F T ++P+  IP  +     IT  MV+    P + +++P  ++FV       G  +LVAHNA  FDV
Subjt:  IAFDIETTGFSRKKDRIVEIAFQDLSGGE-NSTFQTLINPECYIPNSLVH--GITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDV

Query:  PFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQ
         F+          +      +D + LAR L       L K+ L  + ++  I L  + HRA+ D  + + IL+
Subjt:  PFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQ

Arabidopsis top hitse value%identityAlignment
AT5G26940.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-6443.98Show/hide
Query:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE
        MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R++++T       N  SS        +L G+V  +  +     E
Subjt:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE

Query:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL
        +S T+   + ++QQ   ++K+L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI + MV RP+VPRM++LIPI 
Subjt:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL

Query:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL
        L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++IP +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Subjt:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL

Query:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK
        Q+LT DLKL + DL+ R  TASD+   + KNK
Subjt:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK

AT5G26940.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-6443.98Show/hide
Query:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE
        MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R++++T       N  SS        +L G+V  +  +     E
Subjt:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE

Query:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL
        +S T+   + ++QQ   ++K+L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI + MV RP+VPRM++LIPI 
Subjt:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL

Query:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL
        L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++IP +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Subjt:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL

Query:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK
        Q+LT DLKL + DL+ R  TASD+   + KNK
Subjt:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK

AT5G26940.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-6443.98Show/hide
Query:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE
        MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R++++T       N  SS        +L G+V  +  +     E
Subjt:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE

Query:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL
        +S T+   + ++QQ   ++K+L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI + MV RP+VPRM++LIPI 
Subjt:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL

Query:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL
        L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++IP +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Subjt:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL

Query:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK
        Q+LT DLKL + DL+ R  TASD+   + KNK
Subjt:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK

AT5G26940.4 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-6443.98Show/hide
Query:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE
        MC SI +V +  +H+  +      H   +N   SS    L  R  +++G    RW R++++T       N  SS        +L G+V  +  +     E
Subjt:  MCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTE

Query:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL
        +S T+   + ++QQ   ++K+L++ +TVI  D+ETTG  RK +RI+EIA QD++GG  STFQTL+NP    I N+ +HGI + MV RP+VPRM++LIPI 
Subjt:  KSETQKLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECY-IPNSLVHGITSRMVSRPDVPRMKDLIPIL

Query:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL
        L++V SRQKP GY++LVAHN ++FD  FL+NEF+RCS++IP +WL LD++ LAR+ M S +   KLS  SL+AL +YYS+   G AHRA+SDV+ LS + 
Subjt:  LQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDS--KLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLIL

Query:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK
        Q+LT DLKL + DL+ R  TASD+   + KNK
Subjt:  QRLTFDLKLEIPDLIERSFTASDL---IKKNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACAGTTCCAATGTGCTTTTCGATCTTGAGAGTTCCGAAATTTGGAGTCCACACATTAGCTAATTTTTGGAGGACAAACTTCCATCCCCTGAACAGGAATTATGG
TCATAGTTCTTGGTATGATCAGCTTTGTTTTAGAATCTATAACCTTGAAGGAGGGCAAAATAAGAGATGGACCAGAAAATCGATAACCACGAAAGCAGGGAGGAAAGTGA
AGAACAACCCCAGCAGTAAACCAAGTGATATCAGAAATGAAATTTTAGAGGGATCGGTTTCAACAAGCTGTACAGTTAGCATTAATAAGACTGAGAAAAGTGAAACCCAG
AAACTTCAGTATTGTGATATTCAGCAAACATTTACTAAGAACAAGGAGTTGACTAGGCCGGTGACAGTTATAGCCTTTGACATTGAAACAACAGGTTTTAGTAGAAAAAA
GGATAGGATAGTGGAAATAGCCTTTCAAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCTCTTGTACATGGCA
TTACAAGCCGTATGGTCAGCAGACCCGATGTTCCAAGGATGAAGGATCTTATACCAATTTTATTACAATTTGTTTTAAGCCGTCAGAAACCTGATGGTTATATATTATTG
GTAGCTCATAATGCTCGTACCTTCGACGTGCCCTTTCTGCTCAATGAATTCAGCCGCTGCTCCTTCGACATTCCTCAAGATTGGCTATTTCTTGATAATATGATTTTAGC
CCGTCAACTGATGATATCCTCAGATTCAAAGCTTTCAAAAATTTCGTTACAAGCTCTTCGCGAGTATTACAGTATTCCGCTGGTGGGTTCAGCTCACAGAGCAATGTCGG
ATGTGATGTCGTTGTCGCTGATTCTTCAGAGGCTTACTTTCGACCTCAAGCTGGAAATCCCCGATCTCATTGAAAGATCTTTCACTGCTTCAGACCTGATTAAGAAGAAC
AAGGAC
mRNA sequenceShow/hide mRNA sequence
ATGATAACAGTTCCAATGTGCTTTTCGATCTTGAGAGTTCCGAAATTTGGAGTCCACACATTAGCTAATTTTTGGAGGACAAACTTCCATCCCCTGAACAGGAATTATGG
TCATAGTTCTTGGTATGATCAGCTTTGTTTTAGAATCTATAACCTTGAAGGAGGGCAAAATAAGAGATGGACCAGAAAATCGATAACCACGAAAGCAGGGAGGAAAGTGA
AGAACAACCCCAGCAGTAAACCAAGTGATATCAGAAATGAAATTTTAGAGGGATCGGTTTCAACAAGCTGTACAGTTAGCATTAATAAGACTGAGAAAAGTGAAACCCAG
AAACTTCAGTATTGTGATATTCAGCAAACATTTACTAAGAACAAGGAGTTGACTAGGCCGGTGACAGTTATAGCCTTTGACATTGAAACAACAGGTTTTAGTAGAAAAAA
GGATAGGATAGTGGAAATAGCCTTTCAAGATCTTTCAGGAGGAGAAAATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCTCTTGTACATGGCA
TTACAAGCCGTATGGTCAGCAGACCCGATGTTCCAAGGATGAAGGATCTTATACCAATTTTATTACAATTTGTTTTAAGCCGTCAGAAACCTGATGGTTATATATTATTG
GTAGCTCATAATGCTCGTACCTTCGACGTGCCCTTTCTGCTCAATGAATTCAGCCGCTGCTCCTTCGACATTCCTCAAGATTGGCTATTTCTTGATAATATGATTTTAGC
CCGTCAACTGATGATATCCTCAGATTCAAAGCTTTCAAAAATTTCGTTACAAGCTCTTCGCGAGTATTACAGTATTCCGCTGGTGGGTTCAGCTCACAGAGCAATGTCGG
ATGTGATGTCGTTGTCGCTGATTCTTCAGAGGCTTACTTTCGACCTCAAGCTGGAAATCCCCGATCTCATTGAAAGATCTTTCACTGCTTCAGACCTGATTAAGAAGAAC
AAGGAC
Protein sequenceShow/hide protein sequence
MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRWTRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQ
KLQYCDIQQTFTKNKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSLVHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILL
VAHNARTFDVPFLLNEFSRCSFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSLILQRLTFDLKLEIPDLIERSFTASDLIKKN
KD