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MS022762 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022762
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine/arginine-rich splicing factor 11
Genome locationscaffold73:309435..311408
RNA-Seq ExpressionMS022762
SyntenyMS022762
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008450603.1 PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo]1.4e-4094.64Show/hide
Query:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
        RS SSS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKR
Subjt:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR

Query:  NELLKFLNSSFD
        NELLKFLNSSFD
Subjt:  NELLKFLNSSFD

XP_011659818.1 NKAP family protein isoform X2 [Cucumis sativus]7.5e-3994.44Show/hide
Query:  SSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELL
        SS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEE KRNELL
Subjt:  SSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELL

Query:  KFLNSSFD
        KFLNSSFD
Subjt:  KFLNSSFD

XP_022136184.1 serine/arginine-rich splicing factor 11 [Momordica charantia]7.0e-45100Show/hide
Query:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
        RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
Subjt:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR

Query:  NELLKFLNSSFD
        NELLKFLNSSFD
Subjt:  NELLKFLNSSFD

XP_031738322.1 NKAP family protein isoform X1 [Cucumis sativus]3.4e-3994.5Show/hide
Query:  SSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNEL
        SSS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEE KRNEL
Subjt:  SSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNEL

Query:  LKFLNSSFD
        LKFLNSSFD
Subjt:  LKFLNSSFD

XP_038879353.1 NKAP family protein [Benincasa hispida]5.2e-4092.86Show/hide
Query:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
        R+ SSSQSEPETSGRSKRHK+NDR K+DKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKR
Subjt:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR

Query:  NELLKFLNSSFD
        NELLKFLNSSFD
Subjt:  NELLKFLNSSFD

TrEMBL top hitse value%identityAlignment
A0A0A0LVZ3 Uncharacterized protein3.6e-3994.44Show/hide
Query:  SSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELL
        SS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEE KRNELL
Subjt:  SSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELL

Query:  KFLNSSFD
        KFLNSSFD
Subjt:  KFLNSSFD

A0A1S3BQ85 peptidyl-prolyl cis-trans isomerase G6.6e-4194.64Show/hide
Query:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
        RS SSS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKR
Subjt:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR

Query:  NELLKFLNSSFD
        NELLKFLNSSFD
Subjt:  NELLKFLNSSFD

A0A6J1C3K8 serine/arginine-rich splicing factor 113.4e-45100Show/hide
Query:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
        RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
Subjt:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR

Query:  NELLKFLNSSFD
        NELLKFLNSSFD
Subjt:  NELLKFLNSSFD

A0A6J1EV15 serine/arginine-rich splicing factor 11 isoform X14.5e-3792.86Show/hide
Query:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
        RS SSSQSEPE SGRSKRHKKND TK  KERERSKS HHKRRKHKAKEKQPEERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKR
Subjt:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR

Query:  NELLKFLNSSFD
        NELLKFLNSSFD
Subjt:  NELLKFLNSSFD

A0A6J1HZG5 probable splicing factor, arginine/serine-rich 7 isoform X14.5e-3792.86Show/hide
Query:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR
        RS SSSQSEPE SGRSKRHKKND TK  KERERSKS HHKRRKHKAKEKQPEERSSSPVQLSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKR
Subjt:  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKR

Query:  NELLKFLNSSFD
        NELLKFLNSSFD
Subjt:  NELLKFLNSSFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G27860.1 unknown protein9.2e-2766.67Show/hide
Query:  SGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRN
        S SSS+S      +S+RHKK+++ KK K++ERSKSH HKR K++ ++K   E SS PV+LSKFL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRN
Subjt:  SGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRN

Query:  ELLKFLNSSFD
        ELLKFLN+SFD
Subjt:  ELLKFLNSSFD

AT5G27860.2 unknown protein9.2e-2766.67Show/hide
Query:  SGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRN
        S SSS+S      +S+RHKK+++ KK K++ERSKSH HKR K++ ++K   E SS PV+LSKFL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRN
Subjt:  SGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRN

Query:  ELLKFLNSSFD
        ELLKFLN+SFD
Subjt:  ELLKFLNSSFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAAGTGGTAGCTCGTCTCAAAGCGAGCCTGAAACCTCGGGTCGTTCAAAGCGGCATAAGAAGAATGATAGAACGAAGAAGGACAAGGAGAGAGAGCGAAGTAAGAGTCA
TCACCATAAAAGGCGTAAACATAAAGCTAAAGAGAAGCAGCCAGAAGAGAGAAGTAGCAGCCCTGTACAGCTTTCTAAGTTCCTAGCTCGTGAGAAGGATGATGGTGCCC
GACGGAGTGCTGTCTCTGGCAAAAAGATTTTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGC
TTTGAT
mRNA sequenceShow/hide mRNA sequence
AGAAGTGGTAGCTCGTCTCAAAGCGAGCCTGAAACCTCGGGTCGTTCAAAGCGGCATAAGAAGAATGATAGAACGAAGAAGGACAAGGAGAGAGAGCGAAGTAAGAGTCA
TCACCATAAAAGGCGTAAACATAAAGCTAAAGAGAAGCAGCCAGAAGAGAGAAGTAGCAGCCCTGTACAGCTTTCTAAGTTCCTAGCTCGTGAGAAGGATGATGGTGCCC
GACGGAGTGCTGTCTCTGGCAAAAAGATTTTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGC
TTTGAT
Protein sequenceShow/hide protein sequence
RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSS
FD