; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022767 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022767
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Genome locationscaffold73:348634..349123
RNA-Seq ExpressionMS022767
SyntenyMS022767
Gene Ontology termsNA
InterPro domainsIPR006527 - F-box associated domain, type 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135796.1 putative F-box protein At1g46984 [Cucumis sativus]1.9e-1436.41Show/hide
Query:  NGVHFDGALYWVGEDITTNINI----YVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN--------
        +GV+ +G LYWVG     N  I     VI RLD++ EK  E IS P +      +  I V++G  L  +F     F +  W M +D SW K         
Subjt:  NGVHFDGALYWVGEDITTNINI----YVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN--------

Query:  ------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
                    YL LIK CEDG ILC+  G+   +Y+P T+ V IL NQ+ E         ++  WV QIESFSF+ L  IL+
Subjt:  ------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

XP_008450717.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]9.3e-1433.33Show/hide
Query:  NGVHFDGALYWVGED---ITTNINIY--VICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN-------
        +GV+F+G LYWVG         ++ Y  V+ RLD+  EK  + IS+P      Y    +GV++G        E   F + VW M +D SW K        
Subjt:  NGVHFDGALYWVGED---ITTNINIY--VICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN-------

Query:  --------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
                      YL L+K CEDG ILC+  G+   +Y+P+T+++ IL +Q+ E         ++G W  QIESFSF+ L   L+
Subjt:  --------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

XP_022143297.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]7.1e-1432.58Show/hide
Query:  NGVHFDGALYWVGEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKNY-----------
        + V+F+G+LYW+G+ +    N  V+ RLD+E+E+L E IS P++        +IGVF+G +L  + ++  +  + VW M +D SW K +           
Subjt:  NGVHFDGALYWVGEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKNY-----------

Query:  -------LLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
               L LI+ C+DG+ILC++ GL   +YN +T+++  L  Q+                V +I+SF+FD L KIL+
Subjt:  -------LLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]7.6e-1634.97Show/hide
Query:  NGVHFDGALYWVGEDITTNINIY-VICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGN-NLNASFSEIPWFTFQVWIMGKDCSWIKNYLL-------
        +GV+F+G LYWVG     N  +  VI RLD+E +K  + IS P +         IGV++    L     +   F + VW M +D SWIK ++L       
Subjt:  NGVHFDGALYWVGEDITTNINIY-VICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGN-NLNASFSEIPWFTFQVWIMGKDCSWIKNYLL-------

Query:  --------------LIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
                      LIK CEDG ILC+  GLY  +Y+P+T    +L +Q+ E         +K  WV QI+SF+F+ L  IL+
Subjt:  --------------LIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]2.0e-1633.7Show/hide
Query:  NGVHFDGALYWVGEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKNYLLL--------
        +GV+F+G LYW  +++    +   I RLD+E EKL E IS P    G++     GVF G     +++      +QVW M ++ SWIK ++L         
Subjt:  NGVHFDGALYWVGEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKNYLLL--------

Query:  -------------IKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
                     IKVCEDG+ILC++ G    +Y+P+T++V+IL NQ+ E        + +   V QI+S +F+ L  IL+
Subjt:  -------------IKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

TrEMBL top hitse value%identityAlignment
A0A0A0M1M5 F-box domain-containing protein9.1e-1536.41Show/hide
Query:  NGVHFDGALYWVGEDITTNINI----YVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN--------
        +GV+ +G LYWVG     N  I     VI RLD++ EK  E IS P +      +  I V++G  L  +F     F +  W M +D SW K         
Subjt:  NGVHFDGALYWVGEDITTNINI----YVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN--------

Query:  ------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
                    YL LIK CEDG ILC+  G+   +Y+P T+ V IL NQ+ E         ++  WV QIESFSF+ L  IL+
Subjt:  ------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

A0A1S3BQV8 putative F-box protein At3g211204.5e-1433.33Show/hide
Query:  NGVHFDGALYWVGED---ITTNINIY--VICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN-------
        +GV+F+G LYWVG         ++ Y  V+ RLD+  EK  + IS+P      Y    +GV++G        E   F + VW M +D SW K        
Subjt:  NGVHFDGALYWVGED---ITTNINIY--VICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN-------

Query:  --------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
                      YL L+K CEDG ILC+  G+   +Y+P+T+++ IL +Q+ E         ++G W  QIESFSF+ L   L+
Subjt:  --------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

A0A5D3CIX9 Putative F-box protein4.5e-1433.33Show/hide
Query:  NGVHFDGALYWVGED---ITTNINIY--VICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN-------
        +GV+F+G LYWVG         ++ Y  V+ RLD+  EK  + IS+P      Y    +GV++G        E   F + VW M +D SW K        
Subjt:  NGVHFDGALYWVGED---ITTNINIY--VICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKN-------

Query:  --------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
                      YL L+K CEDG ILC+  G+   +Y+P+T+++ IL +Q+ E         ++G W  QIESFSF+ L   L+
Subjt:  --------------YLLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

A0A5D3CM94 Putative F-box protein6.5e-1333.15Show/hide
Query:  NGVHFDGALYWV-GEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGN-NLNASFSEIPWFTFQVWIMGKDCSWIKNYLLL------
        +GV+F+G LYWV  +    + +I  I RLD+E E L E IS P++  G++     GVF G   L  S +      +QVW M  + SWIK +++       
Subjt:  NGVHFDGALYWV-GEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGN-NLNASFSEIPWFTFQVWIMGKDCSWIKNYLLL------

Query:  ----------------IKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
                        IK CEDG+ILC++ GL+  +Y+P+T+   IL +Q+ +          K   V  I+SF+F+ L  IL+
Subjt:  ----------------IKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

A0A6J1CQE2 F-box/kelch-repeat protein At3g06240-like3.5e-1432.58Show/hide
Query:  NGVHFDGALYWVGEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKNY-----------
        + V+F+G+LYW+G+ +    N  V+ RLD+E+E+L E IS P++        +IGVF+G +L  + ++  +  + VW M +D SW K +           
Subjt:  NGVHFDGALYWVGEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKNY-----------

Query:  -------LLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS
               L LI+ C+DG+ILC++ GL   +YN +T+++  L  Q+                V +I+SF+FD L KIL+
Subjt:  -------LLLIKVCEDGEILCVVYGLYFFMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGGGGTTCATTTTGATGGAGCCCTCTATTGGGTTGGGGAAGACATAACGACCAACATTAATATATATGTCATCTGTCGTTTGGATGTTGAACAAGAGAAACTAACTGA
ACCAATTTCTCTTCCCAGAAATTCAGTTGGGTATTACTCCAATTTGGCTATTGGGGTTTTCAGTGGCAATAATCTTAATGCAAGTTTTAGTGAGATTCCATGGTTTACTT
TTCAAGTGTGGATAATGGGGAAAGATTGCTCGTGGATCAAAAACTACCTACTGTTGATCAAAGTTTGTGAGGATGGGGAAATCTTATGTGTTGTATATGGACTTTATTTC
TTCATGTATAATCCACAGACTCGGAAGGTAAGGATATTGAATAATCAAAATGAGGAATATGGTAATTACTTCATGAGATTTAGCAGAAAAGGGTCATGGGTCATTCAGAT
TGAGTCTTTCAGTTTTGACCCTCTCGAAAAGATTTTGTCATACTTCTCT
mRNA sequenceShow/hide mRNA sequence
AATGGGGTTCATTTTGATGGAGCCCTCTATTGGGTTGGGGAAGACATAACGACCAACATTAATATATATGTCATCTGTCGTTTGGATGTTGAACAAGAGAAACTAACTGA
ACCAATTTCTCTTCCCAGAAATTCAGTTGGGTATTACTCCAATTTGGCTATTGGGGTTTTCAGTGGCAATAATCTTAATGCAAGTTTTAGTGAGATTCCATGGTTTACTT
TTCAAGTGTGGATAATGGGGAAAGATTGCTCGTGGATCAAAAACTACCTACTGTTGATCAAAGTTTGTGAGGATGGGGAAATCTTATGTGTTGTATATGGACTTTATTTC
TTCATGTATAATCCACAGACTCGGAAGGTAAGGATATTGAATAATCAAAATGAGGAATATGGTAATTACTTCATGAGATTTAGCAGAAAAGGGTCATGGGTCATTCAGAT
TGAGTCTTTCAGTTTTGACCCTCTCGAAAAGATTTTGTCATACTTCTCT
Protein sequenceShow/hide protein sequence
NGVHFDGALYWVGEDITTNINIYVICRLDVEQEKLTEPISLPRNSVGYYSNLAIGVFSGNNLNASFSEIPWFTFQVWIMGKDCSWIKNYLLLIKVCEDGEILCVVYGLYF
FMYNPQTRKVRILNNQNEEYGNYFMRFSRKGSWVIQIESFSFDPLEKILSYFS