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MS022784 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022784
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNucleolar protein 10
Genome locationscaffold73:465294..465389
RNA-Seq ExpressionMS022784
SyntenyMS022784
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0042254 - ribosome biogenesis (biological process)
GO:0030515 - snoRNA binding (molecular function)
InterPro domainsIPR007264 - H/ACA ribonucleoprotein complex, subunit Nop10
IPR036756 - H/ACA ribonucleoprotein complex, subunit Nop10 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACU14518.1 unknown [Glycine max]2.6e-0896.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

XP_011651438.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]2.6e-0896.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

XP_022155661.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Momordica charantia]6.7e-09100Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

XP_039038384.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hibiscus syriacus]2.0e-0896.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

XP_039070740.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hibiscus syriacus]6.7e-09100Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

TrEMBL top hitse value%identityAlignment
A0A0R4J2W3 Nucleolar protein 101.2e-0896.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

A0A1S3BHD2 Nucleolar protein 101.2e-0896.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

A0A6J1DSC6 Nucleolar protein 103.3e-09100Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

A0A6J1HVE0 Nucleolar protein 101.2e-0896.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

A0A6P4CV10 Nucleolar protein 101.2e-0896.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYSRQRVLLKKRFGLLPTQQ PPKY
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

SwissProt top hitse value%identityAlignment
Q54J26 H/ACA ribonucleoprotein complex subunit 37.2e-0671.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFS DDKYSR+R+ LKKRFGLL TQQ P ++
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

Q6BQP3 H/ACA ribonucleoprotein complex subunit NOP103.8e-0796.15Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQ
        ARFSPDDKYSRQRV LKKRFGLLPTQ
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQ

Q6Q547 H/ACA ribonucleoprotein complex subunit NOP105.6e-0688.46Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQ
        ARFSPDDKYSRQRV LKKRFGL+P Q
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQ

Q93XX8 H/ACA ribonucleoprotein complex subunit 3-like protein3.1e-0987.5Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

Q9V5P6 H/ACA ribonucleoprotein complex subunit 34.3e-0671.88Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSP+DKYSRQR+ +KKRFGLL TQ+  P Y
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

Arabidopsis top hitse value%identityAlignment
AT2G20490.1 nucleolar RNA-binding Nop10p family protein2.2e-1087.5Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY

AT2G20490.2 nucleolar RNA-binding Nop10p family protein2.2e-1087.5Show/hide
Query:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY
        ARFSPDDKYS+QRVLLKKRFGLLPTQ AP +Y
Subjt:  ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGGGTTCTTCTTAAGAAGCGATTTGGCTTGCTCCCCACACAGCAGGCACCGCCAAAGTAC
mRNA sequenceShow/hide mRNA sequence
GCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGGGTTCTTCTTAAGAAGCGATTTGGCTTGCTCCCCACACAGCAGGCACCGCCAAAGTAC
Protein sequenceShow/hide protein sequence
ARFSPDDKYSRQRVLLKKRFGLLPTQQAPPKY