; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022811 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022811
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationscaffold29:55827..55979
RNA-Seq ExpressionMS022811
SyntenyMS022811
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAB41747.1 TPA_inf: RNA-dependent RNA polymerase [Dahlia pinnata mitovirus 1]3.0e-1166.67Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        R+ V  FT+GQPLGF  SWP F LTHHM+VW+AA RVY T K  DYA+LGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

KAF3974216.1 hypothetical protein CMV_002445 [Castanea mollissima]3.0e-1994Show/hide
Query:  SSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        +SVVTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
Subjt:  SSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

KAG5568278.1 hypothetical protein H5410_064699 [Solanum commersonii]6.1e-2094.12Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        RSSVVTFTKGQPLGF RSWPLFTL HHMLVWIA ERVYGTTKLCDYAILGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

THG00166.1 hypothetical protein TEA_003359 [Camellia sinensis var. sinensis]2.1e-2096.08Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        RSSVVTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

YP_009315967.1 hypothetical protein [Cocos nucifera]5.1e-1992.16Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        RSSVVTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLC YAI+GD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

TrEMBL top hitse value%identityAlignment
A0A2Z2C8R3 Uncharacterized protein2.5e-1992.16Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        RSSVVTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLC YAI+GD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

A0A2Z6JKI7 RNA-dependent RNA polymerase1.5e-1166.67Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        R+ V  FT+GQPLGF  SWP F LTHHM+VW+AA RVY T K  DYA+LGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

A0A2Z6JVB3 RNA-dependent RNA polymerase1.5e-1166.67Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        R+ V  FT+GQPLGF  SWP F LTHHM+VW+AA RVY T K  DYA+LGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

A0A4S4DEK5 Uncharacterized protein1.0e-2096.08Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        RSSVVTFTKGQPLGF  SWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

A0A7T0KB43 Uncharacterized protein3.3e-1166.67Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        R SVV+F  GQPLG+  SWPLF LTHH LVW  AE+VY  TKL  Y+ILGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

SwissProt top hitse value%identityAlignment
P92543 Uncharacterized mitochondrial protein AtMg011106.5e-0952.83Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD
        R   V F  GQPLG+  SW LF L+HH +VW+AA R Y   T    DYA+LGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD

P92567 Uncharacterized mitochondrial protein AtMg014102.9e-0950.98Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        R S V F  GQPLG+  SWP F L+HH+LVW  A++V+   +   YA+LGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

P93304 Uncharacterized mitochondrial protein AtMg004905.5e-0867.65Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY
        V+F  GQPLG+  SWPLF L+HHM+VW AAE VY
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY

Q33339 RNA-directed RNA polymerase4.4e-0544.68Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        +T+  GQP+G   S+ +  LTHH++V +AA     TT+  DY ILGD
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD

Arabidopsis top hitse value%identityAlignment
AT2G07749.1 Mitovirus RNA-dependent RNA polymerase4.7e-1052.83Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD
        R   V F  GQPLG+  SW LF L+HH +VW+AA R Y   T    DYA+LGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD

ATMG00490.1 Mitovirus RNA-dependent RNA polymerase3.9e-0967.65Show/hide
Query:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY
        V+F  GQPLG+  SWPLF L+HHM+VW AAE VY
Subjt:  VTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY

ATMG01110.1 Mitovirus RNA-dependent RNA polymerase4.7e-1052.83Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD
        R   V F  GQPLG+  SW LF L+HH +VW+AA R Y   T    DYA+LGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVY--GTTKLCDYAILGD

ATMG01410.1 open reading frame 2042.1e-1050.98Show/hide
Query:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD
        R S V F  GQPLG+  SWP F L+HH+LVW  A++V+   +   YA+LGD
Subjt:  RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGTCATCGGTTGTGACGTTCACGAAGGGTCAACCCCTCGGATTTTGTCGTTCTTGGCCTCTATTCACACTTACACATCATATGCTTGTGTGGATAGCTGCTGAGAGGGT
GTATGGCACGACGAAGCTTTGCGACTATGCCATTCTTGGCGAC
mRNA sequenceShow/hide mRNA sequence
AGGTCATCGGTTGTGACGTTCACGAAGGGTCAACCCCTCGGATTTTGTCGTTCTTGGCCTCTATTCACACTTACACATCATATGCTTGTGTGGATAGCTGCTGAGAGGGT
GTATGGCACGACGAAGCTTTGCGACTATGCCATTCTTGGCGAC
Protein sequenceShow/hide protein sequence
RSSVVTFTKGQPLGFCRSWPLFTLTHHMLVWIAAERVYGTTKLCDYAILGD