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MS022818 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022818
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA polymerase beta subunit
Genome locationscaffold29:81876..82150
RNA-Seq ExpressionMS022818
SyntenyMS022818
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0016788 - hydrolase activity, acting on ester bonds (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFS35539.1 RNA polymerase beta subunit, partial [Fragaria pentaphylla]1.6e-1878.87Show/hide
Query:  LPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA
        LPSHII NNESISKYS FHIRSKF++NCSSFSKS  P     VER ERERCSRRDDTR YRIQRI APF A
Subjt:  LPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA

ANJ59812.3 RNA polymerase beta'' subunit [Nymphaea jamesoniana]1.7e-2069.15Show/hide
Query:  FTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP----VERFERERCSRRDDTRWYRIQRISAPFAAI
        FTR TN IVAS T+  CFGR  LLPS +IGNNESIS+YS FHIRS F+ N SSFSKSRSP    VER ERE CS  DDTRWYRIQ I +PF  I
Subjt:  FTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP----VERFERERCSRRDDTRWYRIQRISAPFAAI

YP_009561505.1 RNA polymerase betasubunit [Commiphora foliacea]2.3e-2570.83Show/hide
Query:  CFFTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA
        CFF RRT WIV SG N  CFGR DLL S++IGNNESIS+YS F+IRSKF++N SSFSKS SP     VER ERERCS  DDTRWYRIQRIS  F A
Subjt:  CFFTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA

YP_009561598.1 RNA polymerase betasubunit [Commiphora gileadensis]1.2e-1558.51Show/hide
Query:  FFTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSR-------RDDTRWYRIQ
        FF RRT WIV SG N  CFGR DLL S++IGNN+SIS+YS F+I SKF++N SSFSKS SP     VER ERERCS         D   WY +Q
Subjt:  FFTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSR-------RDDTRWYRIQ

YP_009945584.1 RNA polymerase beta'' subunit [Schlechtendalia luzulifolia]6.8e-2271.76Show/hide
Query:  RRTNWIVASGTNGC-FGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQR
        RRTNWIVASGTNG  FGR+DLLPS +IGNN+SI +YS FHIRS+F++NCSSFSKS SP     VER ER+RCS  DDT WYR+QR
Subjt:  RRTNWIVASGTNGC-FGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQR

TrEMBL top hitse value%identityAlignment
A0A0A0L219 Uncharacterized protein1.1e-2579.76Show/hide
Query:  SGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA
        SGTN  CFGR+DLLPS IIGNNESISKYS FHI SKF++NCSSFSKSR P     VERFERERCSRR DTRWY IQRISAPF A
Subjt:  SGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA

A0A410P9V7 DNA-directed RNA polymerase1.1e-2570.83Show/hide
Query:  CFFTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA
        CFF RRT WIV SG N  CFGR DLL S++IGNNESIS+YS F+IRSKF++N SSFSKS SP     VER ERERCS  DDTRWYRIQRIS  F A
Subjt:  CFFTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA

A0A410PA56 DNA-directed RNA polymerase subunit beta''6.0e-1658.51Show/hide
Query:  FFTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSR-------RDDTRWYRIQ
        FF RRT WIV SG N  CFGR DLL S++IGNN+SIS+YS F+I SKF++N SSFSKS SP     VER ERERCS         D   WY +Q
Subjt:  FFTRRTNWIVASGTN-GCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSR-------RDDTRWYRIQ

A0A6L2JR57 RNA polymerase beta'' subunit, chloroplastic4.0e-1262.34Show/hide
Query:  RTNWIVASGTNGC-FGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDT
        RT  IVASGTNG  F R+DLLPS +IGNN+SI +YS FHI S+F++N S FSKS SP     VER ER+RCS  +DT
Subjt:  RTNWIVASGTNGC-FGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDT

J9Y0Q7 RNA polymerase beta subunit (Fragment)7.6e-1978.87Show/hide
Query:  LPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA
        LPSHII NNESISKYS FHIRSKF++NCSSFSKS  P     VER ERERCSRRDDTR YRIQRI APF A
Subjt:  LPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSP-----VERFERERCSRRDDTRWYRIQRISAPFAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTTTTTTCACCAGGAGAACTAATTGGATTGTTGCGAGCGGAACGAACGGGTGCTTTGGAAGAAACGATCTGTTACCGAGTCATATTATTGGGAATAACGAAAGCATCTC
TAAATACTCATTTTTTCATATCCGAAGCAAGTTTACAAAAAACTGCTCGAGTTTTAGCAAAAGTCGCTCTCCTGTTGAAAGGTTTGAAAGAGAACGTTGTTCTAGGAGGG
ATGATACCCGTTGGTACCGGATTCAAAGGATTAGCGCACCGTTCGCGGCAATA
mRNA sequenceShow/hide mRNA sequence
TGTTTTTTCACCAGGAGAACTAATTGGATTGTTGCGAGCGGAACGAACGGGTGCTTTGGAAGAAACGATCTGTTACCGAGTCATATTATTGGGAATAACGAAAGCATCTC
TAAATACTCATTTTTTCATATCCGAAGCAAGTTTACAAAAAACTGCTCGAGTTTTAGCAAAAGTCGCTCTCCTGTTGAAAGGTTTGAAAGAGAACGTTGTTCTAGGAGGG
ATGATACCCGTTGGTACCGGATTCAAAGGATTAGCGCACCGTTCGCGGCAATA
Protein sequenceShow/hide protein sequence
CFFTRRTNWIVASGTNGCFGRNDLLPSHIIGNNESISKYSFFHIRSKFTKNCSSFSKSRSPVERFERERCSRRDDTRWYRIQRISAPFAAI