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MS022821 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022821
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold29:93874..94212
RNA-Seq ExpressionMS022821
SyntenyMS022821
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3452222.1 hypothetical protein FNV43_RR08320 [Rhamnella rubrinervis]7.4e-1844.68Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAY
        K +G GCP +H + YC ++C    +E  +I+ FQKSLTGPAL+WF  LD SK+ S+  L+  F+ QY +N ++ P R DL+ + ++ +ESF AY
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAY

XP_023904926.1 uncharacterized protein LOC112016628 [Quercus suber]4.2e-2142.48Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K +G GCP +H + YC ++C    +E  +I+ FQKSLTGPAL+WF  LD SK+ S+  L+  F+ QY +N ++ P R DL+ + ++ +ESF AY  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VAEKKKKKLFEED
        +A + K  + E +
Subjt:  VAEKKKKKLFEED

XP_024626776.2 uncharacterized protein LOC112416686 [Medicago truncatula]7.4e-1839.82Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K  G  CP  H + Y   +    +D+  +I  FQ+SLTGPA KW+T+LD +++ +F  L + F++QYSYN+D+ P RSDL+A++Q   E+F  Y  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VAEKKKKKLFEED
         A +   ++ E++
Subjt:  VAEKKKKKLFEED

XP_039683822.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112420119 [Medicago truncatula]5.7e-1838.94Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K  G  CP  H + Y   +    +D+  +I  FQ+SL  PA KW+T+LD +K+ +F  L + F++QYSYN+D+ P RSDL+A++Q+  E+F  Y  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VAEKKKKKLFEED
         A +   ++ E++
Subjt:  VAEKKKKKLFEED

XP_039685668.1 uncharacterized protein LOC112421946 [Medicago truncatula]4.3e-1840.71Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K  G  CP  H + Y   +    +D+  +I  FQ+SLTGPA KW+T+LD +K+ +F  L + F++QYSYN+D+ P RSDL+A++Q   E+F  Y  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VAEKKKKKLFEED
         A +   ++ E++
Subjt:  VAEKKKKKLFEED

TrEMBL top hitse value%identityAlignment
A0A1B5Z7G6 Retrotrans_gag domain-containing protein (Fragment)5.2e-1745.1Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K  G  CP SH   Y   +     ++  +I  FQ SLTG ALKW+ SLD  K+ +F  L + F+ QY YNLD+ P R  L+A+SQK  E+F  Y  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VA
        VA
Subjt:  VA

A0A2Z6NQD6 Retrotrans_gag domain-containing protein5.2e-1745.1Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K  G  CP SH   Y   +     ++  +I  FQ SLTG ALKW+ SLD  K+ +F  L + F+ QY YNLD+ P R  L+A+SQK  E+F  Y  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VA
        VA
Subjt:  VA

A0A2Z6PA57 Retrotrans_gag domain-containing protein (Fragment)5.2e-1745.1Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K  G  CP SH   Y   +     ++  +I  FQ SLTG ALKW+ SLD  K+ +F  L + F+ QY YNLD+ P R  L+A+SQK  E+F  Y  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VA
        VA
Subjt:  VA

A0A2Z6PGB7 Retrotrans_gag domain-containing protein4.0e-1745.1Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K  G  CP SH   Y   +     ++  +I  FQ SLTG ALKW+ SLD  K+ +F  L + F+ QY YNLD+ P R  L+A+SQK  E+F  Y  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VA
        VA
Subjt:  VA

A0A2Z6PHD8 Retrotrans_gag domain-containing protein5.2e-1745.1Show/hide
Query:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA
        K  G  CP SH   Y   +     ++  +I  FQ SLTG ALKW+ SLD  K+ +F  L + F+ QY YNLD+ P R  L+A+SQK  E+F  Y  RWR 
Subjt:  KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRA

Query:  VA
        VA
Subjt:  VA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAGACAACGGAAAAGGTTGTCCCATCTCTCATCAACAAGCCTATTGTGCCGATGTCTGCCCTTTAGAGAAAGACGAAGGGGCTGTCATCCGATTGTTCCAGAAGAGTCT
TACGGGCCCTGCACTGAAATGGTTTACGTCACTAGATCATTCTAAGTTAGCCTCGTTTGAGCAATTATCTCAAATGTTCATCGATCAGTACTCCTACAACTTAGATGTCA
AACCAAAAAGATCAGATCTCGAGGCTCTAAGTCAGAAAGGTGATGAAAGTTTCAGTGCCTACGTAGGCAGGTGGAGGGCTGTCGCTGAAAAAAAAAAAAAAAAACTCTTT
GAAGAAGAC
mRNA sequenceShow/hide mRNA sequence
AAAGACAACGGAAAAGGTTGTCCCATCTCTCATCAACAAGCCTATTGTGCCGATGTCTGCCCTTTAGAGAAAGACGAAGGGGCTGTCATCCGATTGTTCCAGAAGAGTCT
TACGGGCCCTGCACTGAAATGGTTTACGTCACTAGATCATTCTAAGTTAGCCTCGTTTGAGCAATTATCTCAAATGTTCATCGATCAGTACTCCTACAACTTAGATGTCA
AACCAAAAAGATCAGATCTCGAGGCTCTAAGTCAGAAAGGTGATGAAAGTTTCAGTGCCTACGTAGGCAGGTGGAGGGCTGTCGCTGAAAAAAAAAAAAAAAAACTCTTT
GAAGAAGAC
Protein sequenceShow/hide protein sequence
KDNGKGCPISHQQAYCADVCPLEKDEGAVIRLFQKSLTGPALKWFTSLDHSKLASFEQLSQMFIDQYSYNLDVKPKRSDLEALSQKGDESFSAYVGRWRAVAEKKKKKLF
EED