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MS022832 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022832
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold29:145523..145732
RNA-Seq ExpressionMS022832
SyntenyMS022832
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1817824.1 unnamed protein product [Ananas comosus var. bracteatus]2.4e-0657.78Show/hide
Query:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT
        PY  +H+ VP+PPGY  P F MFDG G P+ HL+HF  AC DT T
Subjt:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT

CAD1837639.1 unnamed protein product [Ananas comosus var. bracteatus]2.0e-0555.56Show/hide
Query:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT
        PYP +H+ VPYPP Y  P F MFDG G  + HL+HF  AC D  T
Subjt:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT

CAN71468.1 hypothetical protein VITISV_038992 [Vitis vinifera]6.9e-0640.62Show/hide
Query:  YRSPYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRS
        Y+  YP Y + VP+PP YQ P FS FDG G P  H++HF++ C DT       +      LR++
Subjt:  YRSPYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRS

XP_017181918.1 uncharacterized protein LOC108170915 [Malus domestica]4.0e-0654.17Show/hide
Query:  YRSPYPPYHETVPYPPGYQIPPFSMFDG-RGCPKRHLSHFITACRDTT
        YR PYP +++TVP+P GYQ P F  FDG  G P+ HL+HF +AC +T+
Subjt:  YRSPYPPYHETVPYPPGYQIPPFSMFDG-RGCPKRHLSHFITACRDTT

XP_040372026.1 uncharacterized protein LOC121052108 [Rosa chinensis]2.0e-0552.08Show/hide
Query:  YRSPYPPYHETVPYPPGYQIPPFSMFDG-RGCPKRHLSHFITACRDTT
        Y  PYP +++T+P+P GYQ P F  FDG  G P  HL+HF +ACR+T+
Subjt:  YRSPYPPYHETVPYPPGYQIPPFSMFDG-RGCPKRHLSHFITACRDTT

TrEMBL top hitse value%identityAlignment
A0A5J9WT05 Retrotrans_gag domain-containing protein (Fragment)1.6e-0548.94Show/hide
Query:  YRSPYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTT
        Y  PYPP  + VP+P  Y+ P FS F+G G P  H++HF+ AC+DT+
Subjt:  YRSPYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTT

A0A6V7NHB6 Retrotrans_gag domain-containing protein1.1e-0657.78Show/hide
Query:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT
        PY  +H+ VP+PPGY  P F MFDG G P+ HL+HF  AC DT T
Subjt:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT

A0A6V7PEJ7 Uncharacterized protein2.8e-0553.33Show/hide
Query:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT
        PY  +H+ V +PPGY  P F +FDG G P+ HL+HF  AC DT T
Subjt:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT

A0A6V7Q383 Uncharacterized protein9.7e-0655.56Show/hide
Query:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT
        PYP +H+ VPYPP Y  P F MFDG G  + HL+HF  AC D  T
Subjt:  PYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTT

A5AMW3 Retrotrans_gag domain-containing protein3.3e-0640.62Show/hide
Query:  YRSPYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRS
        Y+  YP Y + VP+PP YQ P FS FDG G P  H++HF++ C DT       +      LR++
Subjt:  YRSPYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAATCCAGCCTTATCGCAGTCCATATCCTCCATATCATGAAACCGTTCCTTATCCACCAGGGTACCAAATCCCACCATTTTCTATGTTTGATGGGAGAGGTTGCCCTAA
AAGACACTTATCTCATTTCATTACCGCTTGCCGGGACACTACCACAAAATGGGTCTTTGCCATTGAGACAATTTCCCCTTTCCTTCGACGGTCCTGCCTA
mRNA sequenceShow/hide mRNA sequence
ACAATCCAGCCTTATCGCAGTCCATATCCTCCATATCATGAAACCGTTCCTTATCCACCAGGGTACCAAATCCCACCATTTTCTATGTTTGATGGGAGAGGTTGCCCTAA
AAGACACTTATCTCATTTCATTACCGCTTGCCGGGACACTACCACAAAATGGGTCTTTGCCATTGAGACAATTTCCCCTTTCCTTCGACGGTCCTGCCTA
Protein sequenceShow/hide protein sequence
TIQPYRSPYPPYHETVPYPPGYQIPPFSMFDGRGCPKRHLSHFITACRDTTTKWVFAIETISPFLRRSCL