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MS022833 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022833
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein S10
Genome locationscaffold29:150074..150343
RNA-Seq ExpressionMS022833
SyntenyMS022833
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD25546.1 TPA_asm: hypothetical protein HUJ06_027010 [Nelumbo nucifera]3.2e-4095.56Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        KE PPKVTTTKIRIVIRSFDHPF ENHFWGLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTE HELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

KAF4348321.1 hypothetical protein F8388_018561 [Cannabis sativa]8.4e-4197.78Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        KERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

KAF4379538.1 hypothetical protein F8388_023555 [Cannabis sativa]1.9e-4096.67Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        K+RPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

QLA48235.1 ribosomal protein S10 [Medinilla magnifica]1.7e-4196.67Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        KERPPKVTTTKIRIVIRSFDHPF ENH WGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFE+EIKKQFLVIKTERHELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

QVJ97849.1 hypothetical protein [Apium graveolens]1.4e-4096.67Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        KERPPKVTTTKIRIVIRSFDHPFFEN FWGLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIK ERHELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

TrEMBL top hitse value%identityAlignment
A0A151UHR2 Ribosomal_S10 domain-containing protein3.5e-4094.44Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        KERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKK+FL+IKTE+HELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

A0A7D9MX58 Ribosomal protein S108.2e-4296.67Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        KERPPKVTTTKIRIVIRSFDHPF ENH WGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFE+EIKKQFLVIKTERHELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

A0A7J6DQE3 Ribosomal_S10 domain-containing protein4.1e-4197.78Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        KERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

A0A7J6G9N2 Ribosomal_S10 domain-containing protein9.1e-4196.67Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        K+RPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

V9PBK4 Ribosomal protein S107.7e-4094.44Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        KERPPKVTTTKIRIVIRSFDHPFFENH WGLPPYTRKIGLPESRV YTVLRSPHIDKKSREQFEMEIKK+FLVIKTE HELRKK FRLKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

SwissProt top hitse value%identityAlignment
A0LII9 30S ribosomal protein S103.7e-0738.16Show/hide
Query:  VTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI
        +T  +IRI ++++DH   +     +    +K G        LP     YTVLRSPH+DKKSREQFE+ + K+ + I
Subjt:  VTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI

P26869 Ribosomal protein S10, mitochondrial8.8e-1764.2Show/hide
Query:  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLK
        T KI IVI+S     FEN   GL   TRKIGLP+ +  YTVLRSPHIDKKSREQFEM I KQ LVI+TE H+LR+K   LK
Subjt:  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLK

P42797 40S ribosomal protein S10, mitochondrial1.4e-2261.11Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        +E   K+  TKI I IRSF +P  E   W LPP+TRK+ +P++R  YTVLRSPH+DKKSREQFEM  KK+FLVIK + HEL KK F LKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

P51428 Ribosomal protein S10, mitochondrial4.2e-3590.24Show/hide
Query:  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        TTKIRIVIRSFDHPF ENHF GLPPYT KIGLPESRV YTVLRSPHIDKKSREQFEMEIKK++LVIKTE+HELRKKFF LKR
Subjt:  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR

Q6MJ14 30S ribosomal protein S106.3e-0743.06Show/hide
Query:  KIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI
        KIRI +++FDH   +     +    R+ G        LP     YTVLRSPH+DKKSREQFE+   K+ L I
Subjt:  KIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVI

Arabidopsis top hitse value%identityAlignment
AT3G22300.1 ribosomal protein S101.0e-2361.11Show/hide
Query:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
        +E   K+  TKI I IRSF +P  E   W LPP+TRK+ +P++R  YTVLRSPH+DKKSREQFEM  KK+FLVIK + HEL KK F LKR
Subjt:  KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAGAAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAA
GATTGGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCA
TAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGC
mRNA sequenceShow/hide mRNA sequence
AAAGAAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAA
GATTGGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCA
TAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGC
Protein sequenceShow/hide protein sequence
KERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR