CuGenDBv2

Gene ID	MS022852
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit 9, mitochondrial
Genome location	scaffold29:188157..188351
RNA-Seq Expression	MS022852
Synteny	MS022852
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008289 - lipid binding (molecular function) GO:0015078 - proton transmembrane transporter activity (molecular function)
InterPro domains	IPR000454 - ATP synthase, F0 complex, subunit C IPR002379 - V-ATPase proteolipid subunit C-like domain IPR020537 - ATP synthase, F0 complex, subunit C, DCCD-binding site IPR035921 - F/V-ATP synthase subunit C superfamily IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAB9092652.1 hypothetical protein FH972_026963 [Carpinus fangiana]

2.3e-16

86.15

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FA   A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

KAF3452179.1 hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis]

1.0e-16

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFA-SKQLTF
        LSGRGAAVGIGNV SSLIHSVARNPSLAKQSFGYAILGFALTEAIASFA FFA S Q +F
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFA-SKQLTF

KAF3452251.1 hypothetical protein FNV43_RR08349 [Rhamnella rubrinervis]

5.2e-16

83.08

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

WP_131796660.1 ATP synthase subunit C family protein [Candidatus Frankia datiscae]

5.0e-19

93.44

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLI
        LSGRGAA GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASK L  LI
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLI

YP_009241667.1 ATPase subunit 9 [Ziziphus jujuba]

5.2e-16

83.08

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

TrEMBL top hits

e value

%identity

Alignment

A0A142BZ06 ATP synthase subunit 9, mitochondrial

2.5e-16

83.08

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

A0A5C2FTY7 ATP synthase subunit 9, mitochondrial

2.5e-16

83.08

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

A0A5C2FV42 ATP synthase subunit 9, mitochondrial

2.5e-16

83.08

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

A0A5N6L5T5 ATP-synt_C domain-containing protein

1.1e-16

86.15

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FA   A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

A0A6B9CPM8 ATP synthase subunit 9, mitochondrial

2.5e-16

83.08

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

SwissProt top hits

e value

%identity

Alignment

P17254 ATP synthase subunit 9, mitochondrial

8.3e-17

78.12

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSV
        ++  GAA+GIGNV SS IHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FLISSV
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSV

P60113 ATP synthase subunit 9, mitochondrial

1.1e-16

76.92

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FAP  A     FLI  VF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

P60117 ATP synthase subunit 9, mitochondrial

2.7e-15

80.33

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Query:  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        GAA+GIGNVFSSLIHSVARNPSLAKQ FGYAILGFALTEAIA FA   A     FLIS VF
Subjt:  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

P60118 ATP synthase subunit 9, mitochondrial

2.7e-15

80.33

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Query:  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        GAA+GIGNVFSSLIHSVARNPSLAKQ FGYAILGFALTEAIA FA   A     FLIS VF
Subjt:  GAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

Q37550 ATP synthase subunit 9, mitochondrial

8.9e-19

81.54

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAP  A     FLISSVF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

Arabidopsis top hits

e value

%identity

Alignment

AT2G07671.1 ATP synthase subunit C family protein

7.7e-18

76.92

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FAP  A     FLI  VF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

ATMG00040.1 ATP synthase subunit C family protein

4.0e-06

54.17

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASF
        ++  GAA+GIGNVFSSLIHSVARNPSLA  +    ++   L   +A+F
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASF

ATMG01080.1 mitochondrial F0-ATPase subunit 9

7.7e-18

76.92

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Query:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF
        ++  GAA+GIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIA FAP  A     FLI  VF
Subjt:  LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

Sequences

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CDS sequence

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CTGAGCGGGAGGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTT
GGGCTTTGCTCTAACCGAAGCTATTGCATCCTTTGCCCCCTTCTTCGCAAGTAAGCAACTGACCTTTTTGATCTCATCCGTATTC

mRNA sequence

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CTGAGCGGGAGGGGAGCTGCAGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTT
GGGCTTTGCTCTAACCGAAGCTATTGCATCCTTTGCCCCCTTCTTCGCAAGTAAGCAACTGACCTTTTTGATCTCATCCGTATTC

Protein sequence

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LSGRGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIASFAPFFASKQLTFLISSVF

MS022852 (gene) of Bitter gourd (TR) v1 genome