CuGenDBv2

Gene ID	MS022864
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome c biogenesis FC
Genome location	scaffold29:243636..244197
RNA-Seq Expression	MS022864
Synteny	MS022864
Gene Ontology terms	GO:0017004 - cytochrome complex assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044955 - Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein

Homology

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GenBank top hits

e value

%identity

Alignment

CDY17587.1 BnaC01g27110D [Brassica napus]

6.9e-43

81.97

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL+F REAKLE +EQMVQL+NFFFFI  MVVP GTAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEGKAKH G TGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

NP_001118286.2 LOW protein: cytochrome C biogenesis ccmF-like protein [Arabidopsis thaliana]

6.9e-43

81.97

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL+F REAKLE +EQMVQL+NFFFFI  MVVP GTAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEGKAKH G TGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

XP_015584111.1 uncharacterized protein LOC107262518 [Ricinus communis]

2.3e-46

86.07

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL FSREAKLE +EQMVQL+NFFFFITSMVVPRGTAAPVLLKWFVSRDVP GAPSSNGTIIPIPIS FPLLVYLHSRKFIRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEG AKH GLTGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

XP_022933171.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111440024 [Cucurbita moschata]

3.6e-44

85.47

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVLRSVSGRGEG
        RLIF REAKLEHLE+MVQLNNFFFFITSMVVPRGTA PVLLKWFVSRDVPTGA SSNGTIIPIP SLFPLLVYLHSRKFIRS    KSGVLRS+S  GE 
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVLRSVSGRGEG

Query:  KAKHSGLTGMSNDEMTR
        KAKHSGLT MS D M R
Subjt:  KAKHSGLTGMSNDEMTR

XP_024009256.1 LOW QUALITY PROTEIN: uncharacterized protein LOC18013918 [Eutrema salsugineum]

3.8e-41

80.33

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL+F REAKLE +EQMVQL+NFFF I  MVVP  TAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEGKAKH G TGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

TrEMBL top hits

e value

%identity

Alignment

A0A078FXW6 BnaC01g27110D protein

3.3e-43

81.97

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL+F REAKLE +EQMVQL+NFFFFI  MVVP GTAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEGKAKH G TGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

A0A3P6DAR1 Uncharacterized protein

3.3e-43

81.97

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL+F REAKLE +EQMVQL+NFFFFI  MVVP GTAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEGKAKH G TGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

A0A654GFS6 Uncharacterized protein

3.3e-43

81.97

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL+F REAKLE +EQMVQL+NFFFFI  MVVP GTAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEGKAKH G TGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

A0A6J1EYD2 LOW QUALITY PROTEIN: uncharacterized protein LOC111440024

1.8e-44

85.47

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVLRSVSGRGEG
        RLIF REAKLEHLE+MVQLNNFFFFITSMVVPRGTA PVLLKWFVSRDVPTGA SSNGTIIPIP SLFPLLVYLHSRKFIRS    KSGVLRS+S  GE 
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVLRSVSGRGEG

Query:  KAKHSGLTGMSNDEMTR
        KAKHSGLT MS D M R
Subjt:  KAKHSGLTGMSNDEMTR

F4IMD2 LOW protein: cytochrome C biogenesis ccmF-like protein

3.3e-43

81.97

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL+F REAKLE +EQMVQL+NFFFFI  MVVP GTAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEGKAKH G TGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

SwissProt top hits

e value

%identity

Alignment

P38452 Uncharacterized mitochondrial protein ymf3

2.3e-17

63.16

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Query:  MVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL
        MVQL NFFFF+  +VV  GTAAP+L +W VSRDV TGAP  NGTIIPI  SL  +LVY+HSR F+RS  + K  VL
Subjt:  MVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL

P93286 Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein

5.7e-24

80.26

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Query:  MVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL
        MVQL+NFFFFI  MVV  GTAAPVLLKWFVSRDV TGAP  NGTIIPI ISLF LLVYLHSRK IRS    KSGVL
Subjt:  MVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL

Arabidopsis top hits

e value

%identity

Alignment

AT2G07815.1 BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis 452 (TAIR:ATMG00180.1)

6.4e-47

81.97

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Query:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS
        RL+F REAKLE +EQMVQL+NFFFFI  MVVP GTAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL     RSVS
Subjt:  RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL-----RSVS

Query:  GRGEGKAKHSGLTGMSNDEMTR
        GRGEGKAKH G TGMSNDEMTR
Subjt:  GRGEGKAKHSGLTGMSNDEMTR

ATMG00180.1 cytochrome C biogenesis 452

2.7e-29

85.53

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Query:  MVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL
        MVQL+NFFFFI  MVVP GTAAPVLLKWFVSRDVPTGAP SNGTIIPIPIS FPLLVYLHSRK IRS    KSGVL
Subjt:  MVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVL

Sequences

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CDS sequence

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CGTCTCATCTTCTCTAGAGAAGCGAAACTCGAACATCTCGAGCAGATGGTCCAACTAAATAACTTTTTCTTTTTCATTACTTCCATGGTCGTGCCTCGTGGCACGGCAGC
ACCCGTACTATTGAAATGGTTTGTCAGTAGAGATGTTCCCACAGGTGCCCCTTCTTCCAATGGTACTATAATTCCTATTCCTATCTCTTTATTCCCTCTTTTGGTCTATC
TACATTCCAGGAAATTCATACGCTCCAAAAAAAAAAAAAAAAGTGGAGTCTTGCGAAGCGTGAGCGGGCGCGGAGAAGGAAAGGCCAAACATTCAGGCCTAACGGGAATG
AGCAACGACGAAATGACAAGA

mRNA sequence

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Protein sequence

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RLIFSREAKLEHLEQMVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSKKKKKSGVLRSVSGRGEGKAKHSGLTGM
SNDEMTR

MS022864 (gene) of Bitter gourd (TR) v1 genome