CuGenDBv2

Gene ID	MS022866
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein S3
Genome location	scaffold29:247468..247689
RNA-Seq Expression	MS022866
Synteny	MS022866
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001351 - Ribosomal protein S3, C-terminal IPR018280 - Ribosomal protein S3, conserved site IPR036419 - Ribosomal protein S3, C-terminal domain superfamily IPR044954 - Ribosomal protein S3, mitochondrial, plant

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ABO31946.1 ribosomal protein S3, partial [Itea virginica]

2.0e-32

97.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

ADC43986.1 ribosomal protein S3, partial [Crinodendron hookerianum]

2.0e-32

97.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

YP_002608370.1 ribosomal protein S3 [Vitis vinifera]

2.0e-32

97.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

YP_009913654.1 ribosomal protein S3 [Luffa acutangula]

5.3e-33

98.65

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

YP_010035145.1 ribosomal protein S3 [Euonymus alatus]

2.0e-32

97.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

TrEMBL top hits

e value

%identity

Alignment

A0A7D6C3M1 Ribosomal protein S3

2.6e-33

98.65

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

B0L4P6 Ribosomal protein S3 (Fragment)

9.8e-33

97.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

B6VJV8 Ribosomal protein S3

9.8e-33

97.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

D3GFC2 Ribosomal protein S3 (Fragment)

9.8e-33

97.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

E5DMD0 Ribosomal protein S3 (Fragment)

9.8e-33

97.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

SwissProt top hits

e value

%identity

Alignment

P27754 Ribosomal protein S3, mitochondrial

1.5e-33

94.52

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKK
        IVKDIPLVMKKGVEGIRICCSGRS+GAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGI GVKVWISY K
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKK

P27928 Ribosomal protein S3, mitochondrial

3.1e-28

86.3

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKK
        IVKDIPL+M KGVEGIRICCSGR  GAEIARTEC KYGKTS NVFNQKIDYAPAEVSTR GISGVKV ISY +
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKK

P46773 Ribosomal protein S3, mitochondrial

3.5e-27

84.93

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKK
        IVKDIPL+M KGVEGIRICCSGR  GAEIARTEC KYGKTS NVFNQKIDYA AEVSTR GISGVKV ISY +
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKK

P49386 Ribosomal protein S3, mitochondrial

3.4e-22

74.67

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGR-SEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVK+IP    K VEGIRIC SGR  + AE A+T+C K+ KTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY +K
Subjt:  IVKDIPLVMKKGVEGIRICCSGR-SEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

Q04716 Ribosomal protein S3, mitochondrial

1.3e-34

95.95

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVKDIPLVMKKGVEGIRICCSGR EGAEIARTEC KYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISY KK
Subjt:  IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00800.1 structural constituent of ribosome

4.8e-08

38.81

Show/hide

Query:  KDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWI
        K I L  +   +GI++  +GR +G EIAR E  + G+        KIDY    V T YG+ G+K+WI
Subjt:  KDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWI

ATMG00090.1 structural constituent of ribosome;protein binding

1.1e-23

74.67

Show/hide

Query:  IVKDIPLVMKKGVEGIRICCSGR-SEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK
        IVK+IP    KGVEGIRIC SGR  + AE A+T+C K+ KTSRNVFN KIDYAPAEVSTRYGISGVKVWISY +K
Subjt:  IVKDIPLVMKKGVEGIRICCSGR-SEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATAGTGAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCGTATATGTTGTTCAGGTCGATCAGAAGGCGCGGAAATAGCTAGAACTGAATGCCGAAAGTA
TGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCTGCGGAAGTATCTACTCGTTATGGAATCTCAGGTGTCAAAGTGTGGATTTCATATAAAAAAA
AA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

IVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECRKYGKTSRNVFNQKIDYAPAEVSTRYGISGVKVWISYKKK

MS022866 (gene) of Bitter gourd (TR) v1 genome