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MS022867 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022867
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein L2
Genome locationscaffold29:251362..251613
RNA-Seq ExpressionMS022867
SyntenyMS022867
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR022669 - Ribosomal protein L2, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACH42358.1 ribosomal protein L2, partial [Eschscholzia californica]1.5e-3185.71Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        ATRYEILD NS+IGNCIP ADIRIGTWVHDIEC+PGQ AKLARAAGTFAKIMKEPAP      LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

KAF7117261.1 hypothetical protein RHSIM_RhsimMtG0002500 [Rhododendron simsii]7.6e-3690.48Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        ATRY ILDLNS+IGNCI  +DIRIGTWVHDIECHPGQ AKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEK+IDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

WP_165001736.1 hypothetical protein [Candidatus Frankia datiscae]1.3e-3590.48Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        A RYEIL LN +IGNCIP ADIRIGTWVHDIECHP +SAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEK+IDSRCRATKG
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

XP_019703146.1 uncharacterized protein LOC109505206 [Elaeis guineensis]1.9e-3183.33Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        A RYEILDLNSK+GNCIP ADIR+GTWVHDIECHPGQ AKLARAAGT+AKI+KEPAP      LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

YP_009871058.1 ribosomal protein L2 [Magnolia biondii]8.7e-3284.52Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        +TRYEILDLNS++GNCIP ADIRIGTWVHDIEC+PGQ AKLARAAGTFAKIMKEPAP      LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

TrEMBL top hitse value%identityAlignment
A0A2Z2CEI4 Ribosomal protein L29.4e-3283.33Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        A RYEILDLNSK+GNCIP ADIR+GTWVHDIECHPGQ AKLARAAGT+AKI+KEPAP      LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

A0A6J0PD90 uncharacterized protein LOC1095052069.4e-3283.33Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        A RYEILDLNSK+GNCIP ADIR+GTWVHDIECHPGQ AKLARAAGT+AKI+KEPAP      LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

A0A7D4V835 Ribosomal protein L24.2e-3284.52Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        +TRYEILDLNS++GNCIP ADIRIGTWVHDIEC+PGQ AKLARAAGTFAKIMKEPAP      LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

B5LYN7 Ribosomal protein L2 (Fragment)7.2e-3285.71Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        ATRYEILD NS+IGNCIP ADIRIGTWVHDIEC+PGQ AKLARAAGTFAKIMKEPAP      LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

G9HNT1 Ribosomal protein L29.4e-3283.33Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        A RYEILDLNSK+GNCIP ADIR+GTWVHDIECHPGQ AKLARAAGT+AKI+KEPAP      LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

SwissProt top hitse value%identityAlignment
A4J114 50S ribosomal protein L25.2e-1141.56Show/hide
Query:  DLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        D + K+GNC+P  +I +GT VH+IE +PG  A++ R+AG  A++M +          +RLPSG  +L+   CRAT G
Subjt:  DLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

P0C8K6 60S ribosomal protein L2, mitochondrial6.9e-3280.95Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        A R+EILDLNSK+GN IP ADIR+GTWVHDIECHPGQ AKLARAAGT+AKI+KEPA    S  LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

P26859 60S ribosomal protein L2, mitochondrial3.9e-1966.22Show/hide
Query:  IGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMK--EPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        +GNCIP A I IGTWVH+IE +PGQ AKL RAAGTFA+I++  E  P      +VRLPSGV+KLIDSRCRAT G
Subjt:  IGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMK--EPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

P92812 60S ribosomal protein L2, mitochondrial6.9e-3280.95Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        A R+EILDLNSK+GN IP ADIR+GTWVHDIECHPGQ AKLARAAGT+AKI+KEPA    S  LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

Q2F969 60S ribosomal protein L2, mitochondrial6.9e-3280.95Show/hide
Query:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        A R+EILDLNSK+GN IP ADIR+GTWVHDIECHPGQ AKLARAAGT+AKI+KEPA    S  LVRLPSGVEKLIDSRCRAT G
Subjt:  ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

Arabidopsis top hitse value%identityAlignment
AT2G44065.1 Ribosomal protein L2 family2.2e-1753.85Show/hide
Query:  LDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        +D+NS IG+ +P   +RIGT +H+IE +PGQ AK+ RAAGT AKI+KEPA       L++LPSG  K I+++CRAT G
Subjt:  LDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

AT2G44065.2 Ribosomal protein L2 family2.2e-1753.85Show/hide
Query:  LDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        +D+NS IG+ +P   +RIGT +H+IE +PGQ AK+ RAAGT AKI+KEPA       L++LPSG  K I+++CRAT G
Subjt:  LDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

AT3G51190.1 Ribosomal protein L2 family1.2e-0736Show/hide
Query:  NSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        N  +GN +P   I  G  + ++E H G    LARA+G +A ++     P  +   V+LPSG +K++ S CRA  G
Subjt:  NSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

ATCG00830.1 ribosomal protein L21.0e-0945.95Show/hide
Query:  KIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAK-IMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        K+GN +P  D+ +GT +H+IE   G+  +LARAAG  AK I KE    TL     +LPSG  +LI   C AT G
Subjt:  KIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAK-IMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG

ATCG01310.1 ribosomal protein L21.0e-0945.95Show/hide
Query:  KIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAK-IMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG
        K+GN +P  D+ +GT +H+IE   G+  +LARAAG  AK I KE    TL     +LPSG  +LI   C AT G
Subjt:  KIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAK-IMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAACTAGATACGAGATACTTGATCTAAATTCGAAAATAGGAAATTGCATACCATTCGCCGATATACGTATAGGAACATGGGTACATGATATAGAATGTCATCCAGGTCA
AAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAATAATGAAGGAACCTGCACCCCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAAC
TCATTGATTCCCGATGCCGAGCTACTAAAGGA
mRNA sequenceShow/hide mRNA sequence
GCAACTAGATACGAGATACTTGATCTAAATTCGAAAATAGGAAATTGCATACCATTCGCCGATATACGTATAGGAACATGGGTACATGATATAGAATGTCATCCAGGTCA
AAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAATAATGAAGGAACCTGCACCCCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAAC
TCATTGATTCCCGATGCCGAGCTACTAAAGGA
Protein sequenceShow/hide protein sequence
ATRYEILDLNSKIGNCIPFADIRIGTWVHDIECHPGQSAKLARAAGTFAKIMKEPAPPTLSLRLVRLPSGVEKLIDSRCRATKG