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MS022874 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022874
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationscaffold29:270525..270760
RNA-Seq ExpressionMS022874
SyntenyMS022874
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042227.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.1e-0860Show/hide
Query:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR
        T  AALW+ LL LPLTYALAACP  T  IIREAAE    +     CD EGV+ET R+SRCE + R
Subjt:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR

KAA0056231.1 hypothetical protein E6C27_scaffold967G00180 [Cucumis melo var. makuwa]1.1e-0758.46Show/hide
Query:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR
        T  AALW+ LL LPLTYAL AC   T  IIREAAER   +     CD EGV+ET R+SRCE + R
Subjt:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR

KAA0064098.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-0860Show/hide
Query:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR
        T  AALW+ LL LPLTYALAACP  T  II EAAER   +     CD EGV+ET R+SRCE + R
Subjt:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR

KAG6585891.1 hypothetical protein SDJN03_18624, partial [Cucurbita argyrosperma subsp. sororia]9.8e-1463.86Show/hide
Query:  ATWNHTAAAALWARLLRLPLTYALAACP------GNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDRRSSRDGP
        AT NH AAAALWARLL LPLT ALAACP      G  +F    +++ + +I  LYS D+EGVVET RESRCEGSDRRSS DGP
Subjt:  ATWNHTAAAALWARLLRLPLTYALAACP------GNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDRRSSRDGP

KAG6590352.1 hypothetical protein SDJN03_15775, partial [Cucurbita argyrosperma subsp. sororia]2.0e-1467.07Show/hide
Query:  ATWNHTAAAALWARLLRLPLTYALAACP------GNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDRRSSRDG
        AT NHTAAAALWARLL LPLT ALAACP      G   F     +  + +I  LYS DSEGVVET RESRCEGSDRRSSRDG
Subjt:  ATWNHTAAAALWARLLRLPLTYALAACP------GNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDRRSSRDG

TrEMBL top hitse value%identityAlignment
A0A0D2PZN2 Uncharacterized protein9.9e-0459.26Show/hide
Query:  TWNHTAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEG
        TWNHTAAAAL A LLRLP+TYALAA               +IA+RSLYS D EG
Subjt:  TWNHTAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEG

A0A5A7TKL6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-0860Show/hide
Query:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR
        T  AALW+ LL LPLTYALAACP  T  IIREAAE    +     CD EGV+ET R+SRCE + R
Subjt:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR

A0A5A7URS5 Uncharacterized protein5.1e-0858.46Show/hide
Query:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR
        T  AALW+ LL LPLTYAL AC   T  IIREAAER   +     CD EGV+ET R+SRCE + R
Subjt:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR

A0A5A7V903 Retrovirus-related Pol polyprotein from transposon TNT 1-946.0e-0960Show/hide
Query:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR
        T  AALW+ LL LPLTYALAACP  T  II EAAER   +     CD EGV+ET R+SRCE + R
Subjt:  TAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGACGTGGAACCACACAGCTGCCGCTGCCCTTTGGGCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCGGCAATACGGCTTTCATAATACGCGA
AGCAGCTGAGCGAGCGATAGCTATTCGATCGCTATATTCTTGCGATAGCGAAGGCGTGGTTGAGACTAACAGAGAAAGTCGATGCGAAGGTTCAGATCGAAGATCTTCGC
GAGACGGCCCA
mRNA sequenceShow/hide mRNA sequence
GCGACGTGGAACCACACAGCTGCCGCTGCCCTTTGGGCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCGGCAATACGGCTTTCATAATACGCGA
AGCAGCTGAGCGAGCGATAGCTATTCGATCGCTATATTCTTGCGATAGCGAAGGCGTGGTTGAGACTAACAGAGAAAGTCGATGCGAAGGTTCAGATCGAAGATCTTCGC
GAGACGGCCCA
Protein sequenceShow/hide protein sequence
ATWNHTAAAALWARLLRLPLTYALAACPGNTAFIIREAAERAIAIRSLYSCDSEGVVETNRESRCEGSDRRSSRDGP