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MS022876 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022876
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold29:278656..278866
RNA-Seq ExpressionMS022876
SyntenyMS022876
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR022546 - Uncharacterised protein family Ycf68


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEX76084.1 DNA polymerase-like [Tanacetum cinerariifolium]8.8e-3092.75Show/hide
Query:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

KAG8362786.1 hypothetical protein BUALT_BualtUnG0044000 [Buddleja alternifolia]9.7e-2992.42Show/hide
Query:  PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        PVVWY+VGLV RPAKTAPK++KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

KAG8363149.1 hypothetical protein BUALT_BualtMtG0001200 [Buddleja alternifolia]9.7e-2992.42Show/hide
Query:  PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        PVVWY+VGLV RPAKTAPK++KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

PLY62414.1 hypothetical protein LSAT_5X16680 [Lactuca sativa]8.8e-3092.75Show/hide
Query:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

PLY81935.1 hypothetical protein LSAT_5X16200 [Lactuca sativa]8.8e-3092.75Show/hide
Query:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

TrEMBL top hitse value%identityAlignment
A0A2J6JHW2 Uncharacterized protein ycf684.2e-3092.75Show/hide
Query:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

A0A2J6L3N0 Uncharacterized protein ycf684.2e-3092.75Show/hide
Query:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

A0A4D8Y8D7 Uncharacterized protein ycf681.4e-2890.91Show/hide
Query:  PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        PVVWY+VGLV RPAKTAPK++KRCVPHSR T SDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
Subjt:  PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

A0A5A7V4U9 Uncharacterized protein ycf681.2e-2786.96Show/hide
Query:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        ASHPVVWY VGLV RPAKT P   +RCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGN NGKQG
Subjt:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

A0A6V7PYW1 Uncharacterized protein ycf682.2e-2684.06Show/hide
Query:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG
        AS PVVWY+V +VR P   APKQ+KRCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGN NGKQG
Subjt:  ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGAGCCACCCGGTGGTGTGGTACCTAGTGGGTTTAGTACGCCGCCCTGCCAAAACGGCGCCGAAACAAAAAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGA
TATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGC
mRNA sequenceShow/hide mRNA sequence
GCGAGCCACCCGGTGGTGTGGTACCTAGTGGGTTTAGTACGCCGCCCTGCCAAAACGGCGCCGAAACAAAAAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGA
TATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGC
Protein sequenceShow/hide protein sequence
ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG