CuGenDBv2

Gene ID	MS022888
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein S12
Genome location	scaffold29:335400..335774
RNA-Seq Expression	MS022888
Synteny	MS022888
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR005679 - Ribosomal protein S12, bacterial-type IPR006032 - Ribosomal protein S12/S23 IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QNJ89401.1 ribosomal protein S12 [Oenanthe virgata]

3.2e-62

97.6

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

QWX88123.1 ribosomal protein S12 [Indigofera tinctoria]

4.1e-62

97.6

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKD PGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

XP_023545340.1 uncharacterized protein LOC111804778 [Cucurbita pepo subsp. pepo]

1.9e-62

97.6

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR+STRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

YP_004849331.1 ribosomal protein S12 [Cucumis sativus]

4.1e-62

96.8

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

YP_009709935.1 ribosomal protein S12 [Manihot esculenta]

8.3e-63

98.4

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

TrEMBL top hits

e value

%identity

Alignment

A0A5J6Y1K8 Ribosomal protein S12

4.0e-63

98.4

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

A0A7D6BYE6 Ribosomal protein S12

4.0e-63

98.4

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

A0A7G8P5I5 Ribosomal protein S12

1.5e-62

97.6

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

G3EIY3 Ribosomal protein S12

2.0e-62

96.8

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPR++TRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

W6JLR7 Ribosomal protein S12

4.0e-63

98.4

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

SwissProt top hits

e value

%identity

Alignment

P27070 Ribosomal protein S12, mitochondrial

1.7e-63

95.2

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVR +NRHDIF HIPG+GHN QEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P60096 Ribosomal protein S12, mitochondrial

1.6e-61

93.6

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHN QEH MVLIRGGRVKDSPGVKSH IRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIP+RRRGRSKYGAE+PKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P68535 Ribosomal protein S12, mitochondrial

1.3e-63

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

P68536 Ribosomal protein S12, mitochondrial

1.3e-63

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Q95869 Ribosomal protein S12, mitochondrial

5.6e-62

94.4

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHN QEHSMVLIRGGRVKDSPGVK HCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDLLGIPDRRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07675.1 Ribosomal protein S12/S23 family protein

3.7e-61

91.2

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHN QEHS VLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDL+GIP RRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

ATCG00065.1 ribosomal protein S12A

1.0e-34

57.72

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VR ++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG00905.1 ribosomal protein S12C

1.0e-34

57.72

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VR ++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG01230.1 ribosomal protein S12B

1.0e-34

57.72

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT+ QLIR+ R+  R   ++ A   CPQ++G   RV T TPKKPNSA RK+A+VR ++  +I A+IPG GHNLQEHS+VL+RGGRVKD PGV+ H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATMG00980.1 Ribosomal protein S12/S23 family protein

3.7e-61

91.2

Show/hide

Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG
        MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKKPNSAPRKIAKVR SNRHDIFAHIPG+GHN QEHS VLIRGGRVKDSPGVKSHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPKSI
        VKDL+GIP RRRGRSKYGAEKPKSI
Subjt:  VKDLLGIPDRRRGRSKYGAEKPKSI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGT
TTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGCAAAAGTACGGTTCAGCAATCGACATGATATATTTGCTCACATTCCGGGCAAAGGTCATAATT
TGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGA
AGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATCGATA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRFSNRHDIFAHIPGKGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDR
RRGRSKYGAEKPKSI

MS022888 (gene) of Bitter gourd (TR) v1 genome