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MS022893 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022893
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW protein: cytochrome C biogenesis ccmF-like protein
Genome locationscaffold29:344042..344402
RNA-Seq ExpressionMS022893
SyntenyMS022893
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABF59341.1 unknown protein [Arabidopsis thaliana]1.6e-1264.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

ABK28030.1 unknown, partial [Arabidopsis thaliana]1.6e-1264.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

CAA0413853.1 unnamed protein product [Arabidopsis thaliana]1.6e-1264.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

NP_001118286.2 LOW protein: cytochrome C biogenesis ccmF-like protein [Arabidopsis thaliana]1.6e-1264.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

XP_022549607.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111201654 [Brassica napus]7.5e-1060.61Show/hide
Query:  SGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        SGIDWFRADS SCCLDYRRIRG      G ++T      R     RLPT ARSSIGG+ +WSG KT
Subjt:  SGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

TrEMBL top hitse value%identityAlignment
A0A654GFA0 Uncharacterized protein7.8e-1364.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

A0A654GFS6 Uncharacterized protein7.8e-1364.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

A0MDQ3 Uncharacterized protein (Fragment)7.8e-1364.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

F4IMD2 LOW protein: cytochrome C biogenesis ccmF-like protein7.8e-1364.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

Q1G3R0 Uncharacterized protein7.8e-1364.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G07815.1 BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis 452 (TAIR:ATMG00180.1)1.5e-1664.18Show/hide
Query:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT
        GSGIDWFRADS SCCLDYRRIRG     LG ++   T   ++    RLPTRARSSIGG+  WSGGKT
Subjt:  GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCTCAGGAATCGACTGGTTCCGAGCGGACTCATGGAGCTGCTGCTTGGATTATCGTAGAATAAGAGGATTTTTCTTTCTTAGCTTAGGAAATGACTTAACTTTAAAGAC
CGCCGCTGGGAGGCGAGGGAGTCACTTCCGCCTACCTACTCGTGCTCGTAGCTCGATCGGAGGTCGACGAGTGTGGTCCGGCGGAAAAACA
mRNA sequenceShow/hide mRNA sequence
GGCTCAGGAATCGACTGGTTCCGAGCGGACTCATGGAGCTGCTGCTTGGATTATCGTAGAATAAGAGGATTTTTCTTTCTTAGCTTAGGAAATGACTTAACTTTAAAGAC
CGCCGCTGGGAGGCGAGGGAGTCACTTCCGCCTACCTACTCGTGCTCGTAGCTCGATCGGAGGTCGACGAGTGTGGTCCGGCGGAAAAACA
Protein sequenceShow/hide protein sequence
GSGIDWFRADSWSCCLDYRRIRGFFFLSLGNDLTLKTAAGRRGSHFRLPTRARSSIGGRRVWSGGKT