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MS022959 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022959
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionclathrin coat assembly protein AP180
Genome locationscaffold357:125706..125992
RNA-Seq ExpressionMS022959
SyntenyMS022959
Gene Ontology termsGO:0006897 - endocytosis (biological process)
GO:0048268 - clathrin coat assembly (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0030136 - clathrin-coated vesicle (cellular component)
GO:0005545 - 1-phosphatidylinositol binding (molecular function)
GO:0030276 - clathrin binding (molecular function)
InterPro domainsIPR011417 - AP180 N-terminal homology (ANTH) domain
IPR014712 - ANTH domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140244.1 clathrin coat assembly protein AP180 [Cucumis sativus]1.6e-2158.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DIS G  LLL+
Subjt:  DISHGRVLLLE

XP_008449479.1 PREDICTED: clathrin coat assembly protein AP180 [Cucumis melo]1.6e-2158.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DIS G  LLL+
Subjt:  DISHGRVLLLE

XP_022952666.1 clathrin coat assembly protein AP180 [Cucurbita moschata]1.0e-2058.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR     +ES HG  R            MLIDRI Y  K  D A ATRP GPAK NRLV  SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DIS G  LLL+
Subjt:  DISHGRVLLLE

XP_023553928.1 clathrin coat assembly protein AP180-like [Cucurbita pepo subsp. pepo]1.0e-2058.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR     +ES HG  R            MLIDRI Y  K  D A ATRP GPAK NRLV  SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DIS G  LLL+
Subjt:  DISHGRVLLLE

XP_038887470.1 clathrin coat assembly protein AP180 [Benincasa hispida]7.1e-2258.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRMS----ESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR +    ES HG  R            MLIDRI+Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRMS----ESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DI+ G  LLL+
Subjt:  DISHGRVLLLE

TrEMBL top hitse value%identityAlignment
A0A0A0KGJ5 ENTH domain-containing protein7.6e-2258.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DIS G  LLL+
Subjt:  DISHGRVLLLE

A0A1S3BN17 clathrin coat assembly protein AP1807.6e-2258.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DIS G  LLL+
Subjt:  DISHGRVLLLE

A0A5D3C685 Clathrin coat assembly protein AP1807.6e-2258.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DIS G  LLL+
Subjt:  DISHGRVLLLE

A0A6J1GKV6 clathrin coat assembly protein AP1805.0e-2158.56Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR
        + AFVRTF +YL E LDCFL GK  KR     +ES HG  R            MLIDRI Y  K  D A ATRP GPAK NRLV  SLHAVVQESF+LYR
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYR

Query:  DISHGRVLLLE
        DIS G  LLL+
Subjt:  DISHGRVLLLE

A0A6J1JET6 clathrin coat assembly protein AP180-like6.5e-2158.1Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRMSESDHGRN----------RMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGR
        + AFVRTF +YL E LDCFL GK  KR ++    R            MLIDRISY  K  D A ATRP G AK NRL+Q+SLHAVVQESF+LYRDIS G 
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRMSESDHGRN----------RMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGR

Query:  VLLLE
         LLL+
Subjt:  VLLLE

SwissProt top hitse value%identityAlignment
Q8GX47 Putative clathrin assembly protein At4g026504.3e-0628.12Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRMS------------ESDHG---------------------RNRMLIDRISYRHKFPDIANATRPIGPAKSNRL
        + AFVRT+ +YL E LD  + G+  K+ S            E DH                      +   + +R+ +  +  D   A RP G AK+NR+
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRMS------------ESDHG---------------------RNRMLIDRISYRHKFPDIANATRPIGPAKSNRL

Query:  VQYSLHAVVQESFELYRDISHGRVLLLE
        V  +++ +V+ESF+LY +I+    +L+E
Subjt:  VQYSLHAVVQESFELYRDISHGRVLLLE

Q9LVD8 Putative clathrin assembly protein At5g572001.4e-0430.19Show/hide
Query:  AFVRTFDIYLAEILDCFLIGK--------PHKRMSESDHGRNRM-----LIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHG
        A+VRT+ ++L E L+C+ + K        P    + S   R RM     L++++    +        +P G A SN L+QY+L  V++ESF++Y  I+ G
Subjt:  AFVRTFDIYLAEILDCFLIGK--------PHKRMSESDHGRNRM-----LIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHG

Query:  RVLLLE
         + L++
Subjt:  RVLLLE

Q9ZVN6 Clathrin coat assembly protein AP1803.8e-1846.72Show/hide
Query:  AFVRTFDIYLAEILDCFLIGKPHK---------RMSESDHGRNR--------------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLH
        AFVRTF +YL E LDCFL GK  +         R+S +   R+R                    ML+D+I+Y  K  D A ATRP G AK+NRLV+ SL+
Subjt:  AFVRTFDIYLAEILDCFLIGKPHK---------RMSESDHGRNR--------------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLH

Query:  AVVQESFELYRDISHGRVLLLE
        AV+QESF+LYRDIS G  LLL+
Subjt:  AVVQESFELYRDISHGRVLLLE

Arabidopsis top hitse value%identityAlignment
AT1G03050.1 ENTH/ANTH/VHS superfamily protein2.4e-0432.79Show/hide
Query:  RNRMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE
        +   +  RI +  +  D   A RP G A++NR+V  +L+ +V+ESF++Y D++    +L+E
Subjt:  RNRMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE

AT1G05020.1 ENTH/ANTH/VHS superfamily protein2.7e-1946.72Show/hide
Query:  AFVRTFDIYLAEILDCFLIGKPHK---------RMSESDHGRNR--------------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLH
        AFVRTF +YL E LDCFL GK  +         R+S +   R+R                    ML+D+I+Y  K  D A ATRP G AK+NRLV+ SL+
Subjt:  AFVRTFDIYLAEILDCFLIGKPHK---------RMSESDHGRNR--------------------MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLH

Query:  AVVQESFELYRDISHGRVLLLE
        AV+QESF+LYRDIS G  LLL+
Subjt:  AVVQESFELYRDISHGRVLLLE

AT4G02650.1 ENTH/ANTH/VHS superfamily protein3.1e-0728.12Show/hide
Query:  HRAFVRTFDIYLAEILDCFLIGKPHKRMS------------ESDHG---------------------RNRMLIDRISYRHKFPDIANATRPIGPAKSNRL
        + AFVRT+ +YL E LD  + G+  K+ S            E DH                      +   + +R+ +  +  D   A RP G AK+NR+
Subjt:  HRAFVRTFDIYLAEILDCFLIGKPHKRMS------------ESDHG---------------------RNRMLIDRISYRHKFPDIANATRPIGPAKSNRL

Query:  VQYSLHAVVQESFELYRDISHGRVLLLE
        V  +++ +V+ESF+LY +I+    +L+E
Subjt:  VQYSLHAVVQESFELYRDISHGRVLLLE

AT4G25940.1 ENTH/ANTH/VHS superfamily protein8.4e-0528.7Show/hide
Query:  AFVRTFDIYLAEILDCFLI--------------GKPHKRM--SESDHGRNRMLIDRISYRHKFPDIAN------ATRPIGPAKSNRLVQYSLHAVVQESF
        A++RT+ ++L E L+C+ +              G   K +  + S   R RML D      + P +          +P G A SN L+QY+L  V++ESF
Subjt:  AFVRTFDIYLAEILDCFLI--------------GKPHKRM--SESDHGRNRMLIDRISYRHKFPDIAN------ATRPIGPAKSNRLVQYSLHAVVQESF

Query:  ELYRDISHGRVLLLE
        ++Y  I+ G + L++
Subjt:  ELYRDISHGRVLLLE

AT5G57200.1 ENTH/ANTH/VHS superfamily protein9.9e-0630.19Show/hide
Query:  AFVRTFDIYLAEILDCFLIGK--------PHKRMSESDHGRNRM-----LIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHG
        A+VRT+ ++L E L+C+ + K        P    + S   R RM     L++++    +        +P G A SN L+QY+L  V++ESF++Y  I+ G
Subjt:  AFVRTFDIYLAEILDCFLIGK--------PHKRMSESDHGRNRM-----LIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHG

Query:  RVLLLE
         + L++
Subjt:  RVLLLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACCGCGCCTTCGTCCGCACCTTCGATATCTACCTCGCCGAGATTTTGGACTGCTTTCTCATCGGGAAGCCCCATAAGCGCATGTCCGAGAGTGACCATGGACGGAATCG
GATGTTGATTGATCGAATTTCTTACCGGCATAAATTTCCCGACATAGCAAATGCAACCAGGCCCATCGGACCGGCAAAATCGAACCGATTGGTTCAGTATTCGCTCCACG
CCGTCGTCCAGGAGAGCTTCGAACTCTACCGGGACATCTCCCACGGCCGCGTGCTTCTTCTCGAA
mRNA sequenceShow/hide mRNA sequence
CACCGCGCCTTCGTCCGCACCTTCGATATCTACCTCGCCGAGATTTTGGACTGCTTTCTCATCGGGAAGCCCCATAAGCGCATGTCCGAGAGTGACCATGGACGGAATCG
GATGTTGATTGATCGAATTTCTTACCGGCATAAATTTCCCGACATAGCAAATGCAACCAGGCCCATCGGACCGGCAAAATCGAACCGATTGGTTCAGTATTCGCTCCACG
CCGTCGTCCAGGAGAGCTTCGAACTCTACCGGGACATCTCCCACGGCCGCGTGCTTCTTCTCGAA
Protein sequenceShow/hide protein sequence
HRAFVRTFDIYLAEILDCFLIGKPHKRMSESDHGRNRMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE