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MS022970 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022970
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationscaffold357:235354..235492
RNA-Seq ExpressionMS022970
SyntenyMS022970
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AJO25152.1 ribosomal protein L2 [Solanum lycopersicum]8.9e-1597.78Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
XP_007162786.1 hypothetical protein PHAVU_001G180400g [Phaseolus vulgaris]8.9e-1597.78Show/hide
Query:  ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGE KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
YP_009556302.1 ribosomal protein L2 [Simmondsia chinensis]8.9e-1597.78Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
YP_009569066.1 ribosomal protein L2 [Ancistrocladus tectorius]8.9e-1597.78Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
YP_010039958.1 ribosomal protein L2 [Mucuna pruriens]8.9e-1597.78Show/hide
Query:  ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGE KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
TrEMBL top hitse value%identityAlignment
A0A5P8HA57 50S ribosomal protein L2, chloroplastic4.3e-1597.78Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
A0A6B9QGQ4 50S ribosomal protein L2, chloroplastic4.3e-1597.78Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
A0A6H1YHE2 50S ribosomal protein L2, chloroplastic4.3e-1597.78Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
A0A7S8HPY4 Ribosomal protein L24.3e-1597.78Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
A0A7T7D7D8 Ribosomal protein L24.3e-1597.78Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
SwissProt top hitse value%identityAlignment
A0A398 50S ribosomal protein L2-B, chloroplastic4.4e-1795.45Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        ICLIHYGDGEK YILHPRGA+IGDTIVSGTEVPIKMGNALPLSA
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
A6MMG4 50S ribosomal protein L2-A, chloroplastic9.8e-1795.45Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPI MGNALPLSA
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA
Q14F95 50S ribosomal protein L2-A, chloroplastic9.8e-1795.35Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        ICLIHYGDGEK YILHPRGAIIGDTI+SGTEVPIKMGNALPLS
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Q2PMM3 50S ribosomal protein L2-B, chloroplastic7.5e-1797.67Show/hide
Query:  ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        ICLIHYGDGE KYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Subjt:  ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Q8S8V3 50S ribosomal protein L2-A, chloroplastic1.7e-1695.35Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Arabidopsis top hitse value%identityAlignment
ATCG00830.1 ribosomal protein L21.2e-1795.35Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
ATCG01310.1 ribosomal protein L21.2e-1795.35Show/hide
Query:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
        ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Subjt:  ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
NNCATTTGTCTCATACACTATGGGGATGGTGAGAAATATATTTTACATCCGAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGG
AAATGCCCTACCTTTGAGTGCGGTT
mRNA sequenceShow/hide mRNA sequence
NNCATTTGTCTCATACACTATGGGGATGGTGAGAAATATATTTTACATCCGAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGG
AAATGCCCTACCTTTGAGTGCGGTT
Protein sequenceShow/hide protein sequence
XICLIHYGDGEKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV