; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022978 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022978
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAP-3 complex subunit mu
Genome locationscaffold357:281152..282002
RNA-Seq ExpressionMS022978
SyntenyMS022978
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006897 - endocytosis (biological process)
GO:0009630 - gravitropism (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030131 - clathrin adaptor complex (cellular component)
GO:0031410 - cytoplasmic vesicle (cellular component)
InterPro domainsIPR028565 - Mu homology domain
IPR036168 - AP-2 complex subunit mu, C-terminal superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590499.1 AP-3 complex subunit mu, partial [Cucurbita argyrosperma subsp. sororia]1.6e-6194.4Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNK+CSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMG+VLS LQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

KAG7024033.1 AP-3 complex subunit mu [Cucurbita argyrosperma subsp. argyrosperma]1.6e-6194.4Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNK+CSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMG+VLS LQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

XP_022157023.1 AP-3 complex subunit mu [Momordica charantia]7.5e-6498.4Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMGIVLSGLQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

XP_022968735.1 AP-3 complex subunit mu isoform X1 [Cucurbita maxima]9.2e-6294.4Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGKPIDSIDVQFQLPSCVLS DLTSNYGTVNILSNK+CSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMG+VLSGLQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

XP_022968736.1 AP-3 complex subunit mu isoform X2 [Cucurbita maxima]9.2e-6294.4Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGKPIDSIDVQFQLPSCVLS DLTSNYGTVNILSNK+CSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMG+VLSGLQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

TrEMBL top hitse value%identityAlignment
A0A6J1DSB3 AP-3 complex subunit mu3.7e-6498.4Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMGIVLSGLQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

A0A6J1HCC4 AP-3 complex subunit mu isoform X29.9e-6293.6Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGKPIDSIDVQFQLPSC+LSADLTSNYGTVNILSNK+CSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMG+VLS LQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

A0A6J1HE62 AP-3 complex subunit mu isoform X19.9e-6293.6Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGKPIDSIDVQFQLPSC+LSADLTSNYGTVNILSNK+CSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMG+VLS LQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

A0A6J1HVQ3 AP-3 complex subunit mu isoform X24.5e-6294.4Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGKPIDSIDVQFQLPSCVLS DLTSNYGTVNILSNK+CSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMG+VLSGLQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

A0A6J1HY21 AP-3 complex subunit mu isoform X14.5e-6294.4Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGKPIDSIDVQFQLPSCVLS DLTSNYGTVNILSNK+CSWTIGKMPKDKTPSMSGTLTLETGLQQLH+FPTFQV FKIMG+VLSGLQVDKLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVRS
        VKNLPNHPYKGFRALTRAGKFEVRS
Subjt:  VKNLPNHPYKGFRALTRAGKFEVRS

SwissProt top hitse value%identityAlignment
F4I562 AP-3 complex subunit mu1.6e-4567.74Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGK I+SI + FQLP CV SADL+SN+GTV ILSNK C+WTIG++PKDKTP +SGTL LE GL++LH+FPTF++ FKIMGI LSGL+++KLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVR
        ++ +P   YKGFRA TRAG+F+VR
Subjt:  VKNLPNHPYKGFRALTRAGKFEVR

P53677 AP-3 complex subunit mu-27.7e-1937.3Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKL
        + VG +   GK I+ + V  Q+P  VL+  LT + GT       K+ SW +GK+   K PS+ GT++L+ G  +    PT  + FKI  + +SGL+V++L
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKL

Query:  DVKNLPNHPYKGFRALTRAGKFEVRS
        D+      P+KG + +T+AGKF+VR+
Subjt:  DVKNLPNHPYKGFRALTRAGKFEVRS

P53678 AP-3 complex subunit mu-21.7e-1837.3Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKL
        + VG +   GK I+ + V  Q+P  VL+  LT + GT       K+ SW +GK+   K PS+ GT+ L+ G  +    PT  + FKI  + +SGL+V++L
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKL

Query:  DVKNLPNHPYKGFRALTRAGKFEVRS
        D+      P+KG + +T+AGKF+VR+
Subjt:  DVKNLPNHPYKGFRALTRAGKFEVRS

Q24K11 AP-3 complex subunit mu-12.5e-1733.33Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKL
        + +G + + GK I+ I V   +P  VL+ +LT   G+       K+ +W +GK+   K PS+ G + L++G  +    P+  + FKI  + +SGL+V++L
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKL

Query:  DVKNLPNHPYKGFRALTRAGKFEVRS
        D+      P+KG + +T+AGKF+VR+
Subjt:  DVKNLPNHPYKGFRALTRAGKFEVRS

Q8R2R9 AP-3 complex subunit mu-22.9e-1837.3Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKL
        + VG +   GK I+ + V  Q+P  VL+  LT + GT       K+ SW +GK+   K PS+ GT+ L+ G  +    PT  + FKI  + +SGL+V++L
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKL

Query:  DVKNLPNHPYKGFRALTRAGKFEVRS
        D+      P+KG + +T+AGKF+VR+
Subjt:  DVKNLPNHPYKGFRALTRAGKFEVRS

Arabidopsis top hitse value%identityAlignment
AT1G56590.1 Clathrin adaptor complexes medium subunit family protein1.2e-4667.74Show/hide
Query:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD
        VLVG R+DPGK I+SI + FQLP CV SADL+SN+GTV ILSNK C+WTIG++PKDKTP +SGTL LE GL++LH+FPTF++ FKIMGI LSGL+++KLD
Subjt:  VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLD

Query:  VKNLPNHPYKGFRALTRAGKFEVR
        ++ +P   YKGFRA TRAG+F+VR
Subjt:  VKNLPNHPYKGFRALTRAGKFEVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTTAGTAGGAACTCGAAATGATCCTGGAAAGCCAATCGACTCAATAGACGTGCAGTTTCAATTGCCCTCATGCGTTTTATCTGCTGACCTAACTTCAAATTATGGAAC
AGTGAACATCCTATCTAATAAGATCTGCTCTTGGACAATTGGAAAGATGCCAAAAGATAAAACCCCATCAATGTCTGGAACATTAACACTTGAGACAGGGTTACAACAGC
TTCATCTATTTCCAACATTTCAAGTGTGTTTTAAGATTATGGGCATCGTCCTCTCTGGCCTGCAAGTAGATAAACTTGATGTGAAGAACCTACCAAACCATCCTTACAAA
GGCTTTCGAGCTCTCACACGAGCAGGGAAGTTCGAAGTCCGGTCA
mRNA sequenceShow/hide mRNA sequence
GTGTTAGTAGGAACTCGAAATGATCCTGGAAAGCCAATCGACTCAATAGACGTGCAGTTTCAATTGCCCTCATGCGTTTTATCTGCTGACCTAACTTCAAATTATGGAAC
AGTGAACATCCTATCTAATAAGATCTGCTCTTGGACAATTGGAAAGATGCCAAAAGATAAAACCCCATCAATGTCTGGAACATTAACACTTGAGACAGGGTTACAACAGC
TTCATCTATTTCCAACATTTCAAGTGTGTTTTAAGATTATGGGCATCGTCCTCTCTGGCCTGCAAGTAGATAAACTTGATGTGAAGAACCTACCAAACCATCCTTACAAA
GGCTTTCGAGCTCTCACACGAGCAGGGAAGTTCGAAGTCCGGTCA
Protein sequenceShow/hide protein sequence
VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYK
GFRALTRAGKFEVRS