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MS022983 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022983
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPatatin
Genome locationscaffold357:308380..308559
RNA-Seq ExpressionMS022983
SyntenyMS022983
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8531732.1 hypothetical protein F0562_006551 [Nyssa sinensis]2.5e-0446.97Show/hide
Query:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        S MVD H+S+    +H +  KNYLRIQDD L      + I    N ++L+Q+GE LL+KPVSR  L
Subjt:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
KAA8531733.1 hypothetical protein F0562_006550 [Nyssa sinensis]3.2e-0446.97Show/hide
Query:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        S MVD H+S+    +H    KNYLRIQDD L      + I    N ++L+Q+GE LL+KPVSR  L
Subjt:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
KAF5955651.1 hypothetical protein HYC85_008507 [Camellia sinensis]3.2e-0450Show/hide
Query:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        S MVD HLS     +H  + KNYLRIQDD L      + I  + N E L+++GERLL KPVSR  L
Subjt:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
RDY06347.1 Patatin-like protein 2, partial [Mucuna pruriens]3.2e-0449.23Show/hide
Query:  QMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        +MVD HL+S++   H  N  NYLRIQDD L      + I  + N EKL ++GERLL KPVS+  L
Subjt:  QMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
XP_028067607.1 patatin-like protein 2 [Camellia sinensis]3.2e-0450Show/hide
Query:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        S MVD HLS     +H  + KNYLRIQDD L      + I  + N E L+++GERLL KPVSR  L
Subjt:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
TrEMBL top hitse value%identityAlignment
A0A2K2BI05 Patatin2.0e-0448.48Show/hide
Query:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        + MVD H+S  L  +H +N  NYLRIQDD L      + I  + N E L+++GERLL KPVSR  L
Subjt:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
A0A371HUB9 Patatin (Fragment)1.6e-0449.23Show/hide
Query:  QMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        +MVD HL+S++   H  N  NYLRIQDD L      + I  + N EKL ++GERLL KPVS+  L
Subjt:  QMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
A0A5J5AL80 Patatin1.6e-0446.97Show/hide
Query:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        S MVD H+S+    +H    KNYLRIQDD L      + I    N ++L+Q+GE LL+KPVSR  L
Subjt:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
A0A5J5APP5 Patatin1.2e-0446.97Show/hide
Query:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        S MVD H+S+    +H +  KNYLRIQDD L      + I    N ++L+Q+GE LL+KPVSR  L
Subjt:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
A0A7J7HTR8 Patatin1.6e-0450Show/hide
Query:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
        S MVD HLS     +H  + KNYLRIQDD L      + I  + N E L+++GERLL KPVSR  L
Subjt:  SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVL------LPIHVQNNSEKLIQMGERLLDKPVSRSGL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCACAAATGGTGGATCGCCATCTCTCATCGTATCTTCCACTCATTCATTGGGACAATGCCAAAAACTATCTTCGCATCCAAGATGATGTTCTACTACCAATACACGTCCA
AAATAATTCGGAGAAGCTGATTCAAATGGGTGAAAGGTTGTTGGACAAACCAGTTTCCAGGTCGGGATTG
mRNA sequenceShow/hide mRNA sequence
TCACAAATGGTGGATCGCCATCTCTCATCGTATCTTCCACTCATTCATTGGGACAATGCCAAAAACTATCTTCGCATCCAAGATGATGTTCTACTACCAATACACGTCCA
AAATAATTCGGAGAAGCTGATTCAAATGGGTGAAAGGTTGTTGGACAAACCAGTTTCCAGGTCGGGATTG
Protein sequenceShow/hide protein sequence
SQMVDRHLSSYLPLIHWDNAKNYLRIQDDVLLPIHVQNNSEKLIQMGERLLDKPVSRSGL