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MS022995 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022995
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold357:426429..426653
RNA-Seq ExpressionMS022995
SyntenyMS022995
Gene Ontology termsGO:0006950 - response to stress (biological process)
GO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2682775.1 hypothetical protein I3760_10G000200 [Carya illinoinensis]1.2e-0846.75Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V K I+ L R   W  +  EK  HLV W+KV  PI   GL   NL   NR+LLGKW+WRY ++ +A W+ VI  K+G
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

KAG5568485.1 hypothetical protein H5410_064493 [Solanum commersonii]5.4e-0948.05Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIP--ILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V K +  L R   W   K  KGS+LVNWR V +P  + GL   NLK  N  LL KW+WRY+ +  ALW+ VI  KYG
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIP--ILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

KAG5608422.1 hypothetical protein H5410_019703 [Solanum commersonii]9.3e-0948.05Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V+K +  L R   WK  K  K  +LVNW+ V +     GL   NL+  N SLL KW+WRYI +  ALW+ VIVAKYG
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

KAG5611947.1 hypothetical protein H5410_023228 [Solanum commersonii]1.4e-0948.05Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIP--ILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V+K +  L R   W   K  KGS+LVNWR V +P  + GL   NLK  N  LL KW+WRY+ +  ALW+ VI  KYG
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIP--ILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

KAG6723354.1 hypothetical protein I3842_03G204200 [Carya illinoinensis]5.4e-0944.16Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V+K I+ + R   W     E+  HLVNW+KV  P+   GL   NLK  N++LL KW+WRY  +  ALW++++ AKYG
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

TrEMBL top hitse value%identityAlignment
A0A2N9EUL2 Reverse transcriptase domain-containing protein6.9e-1044.16Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V K I+ + R   W + +     HLVNW  +  P    GLN  NL++ N +LLGKW+WR+ ++++ALWR+V+VAKYG
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPIL--GLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

A0A2N9FHL6 Reverse transcriptase domain-containing protein1.2e-0948.05Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V K I+ LHR   W     E+  HLV W +V  PIP  GL   +L   NR+LLGKW+WR+ +++  LWRRV+VA+YG
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

A0A2N9FKU6 Reverse transcriptase domain-containing protein1.2e-0948.05Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V K I+ LHR   W     E+  HLV W +V  PIP  GL   +L   NR+LLGKW+WR+ +++  LWRRV+VA+YG
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

A0A2N9GCH1 Reverse transcriptase domain-containing protein9.0e-1040.43Show/hide
Query:  KMLHRISQWKHEKMEKG----------------------SHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        KM HR++ WK   + KG                       HLV+W K+  P+   GL   NL++ N++LLGKW+WRY +++DALWRRV+ AKYG
Subjt:  KMLHRISQWKHEKMEKG----------------------SHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

A0A2N9HMA0 Uncharacterized protein6.9e-1046.75Show/hide
Query:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG
        V   ++ L R   W     +   HLVNW K+  PIP  GL   NL+  N+SLLGKW+WRY M +++LWR+V+ AKYG
Subjt:  VIKAIKMLHRISQWKHEKMEKGSHLVNWRKV--PIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTATCAAAGCCATTAAAATGCTTCATAGAATCTCTCAATGGAAACACGAAAAGATGGAGAAGGGCTCACATTTGGTTAATTGGAGAAAGGTTCCAATTCCTATCTTAGG
ATTAAACACCAGTAACCTGAAACAAAATAACCGCTCTCTACTTGGGAAATGGATTTGGAGATACATCATGAAAAAGGATGCTCTTTGGAGAAGAGTAATTGTTGCAAAAT
ATGGC
mRNA sequenceShow/hide mRNA sequence
GTTATCAAAGCCATTAAAATGCTTCATAGAATCTCTCAATGGAAACACGAAAAGATGGAGAAGGGCTCACATTTGGTTAATTGGAGAAAGGTTCCAATTCCTATCTTAGG
ATTAAACACCAGTAACCTGAAACAAAATAACCGCTCTCTACTTGGGAAATGGATTTGGAGATACATCATGAAAAAGGATGCTCTTTGGAGAAGAGTAATTGTTGCAAAAT
ATGGC
Protein sequenceShow/hide protein sequence
VIKAIKMLHRISQWKHEKMEKGSHLVNWRKVPIPILGLNTSNLKQNNRSLLGKWIWRYIMKKDALWRRVIVAKYG