CuGenDBv2

Gene ID	MS023052
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Trafficking protein particle complex subunit
Genome location	scaffold502:158003..163869
RNA-Seq Expression	MS023052
Synteny	MS023052
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016592 - mediator complex (cellular component) GO:1990070 - TRAPPI protein complex (cellular component) GO:1990071 - TRAPPII protein complex (cellular component) GO:1990072 - TRAPPIII protein complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR007194 - Transport protein particle (TRAPP) component IPR016696 - TRAPP I complex, subunit 5 IPR024096 - NO signalling/Golgi transport ligand-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5725867.1 hypothetical protein HS088_TW23G00597 [Tripterygium wilfordii]

2.2e-45

94.23

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGK+KQYSNVLDKPLSKGKQE VSLSAFAFLFSELVQYNQTQVDNI+ELERSRLEDAGYAVGARVLEL CHR+KGNRRE RLLGILSFVHSTVWKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

KAF5749529.1 hypothetical protein HS088_TW04G01498 [Tripterygium wilfordii]

2.0e-46

96.15

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGK+KQYSNVLDKPLSKGKQE VSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLEL CHR+KGNRRETRLLGILSFVHSTVWKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

PQM42050.1 trafficking protein particle complex subunit 5 [Prunus yedoensis var. nudiflora]

5.0e-45

96.15

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGKMKQYSNVLDKPLSKGKQE VSLSAFAFLFSELVQYNQTQVDNIAELER RLEDAGYAVGARVLEL CHR+KGNRRETRLLGILSFVHSTVWKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

XP_022154882.1 trafficking protein particle complex subunit 5 [Momordica charantia]

4.5e-46

98.08

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGKMKQYSNVLDKPLSKGKQE VSLSAFAFLFSELVQYNQTQVDNIAELER RLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

XP_038874607.1 trafficking protein particle complex subunit 5 isoform X2 [Benincasa hispida]

1.7e-45

96.15

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGK+KQYSNVLDKPLSKGKQE VSLSAFAFLFSELVQYNQTQVDNIAELER RLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHST+WKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DMW5 Trafficking protein particle complex subunit

2.2e-46

98.08

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGKMKQYSNVLDKPLSKGKQE VSLSAFAFLFSELVQYNQTQVDNIAELER RLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

A0A6J1EYR6 Trafficking protein particle complex subunit

2.4e-45

94.23

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGK+KQYSNVLD+PLSKGKQE VSLSAFAFLFSELVQYNQTQVDNIAELER RLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHST+WK+L
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

A0A6J1HQV4 Trafficking protein particle complex subunit

2.4e-45

94.23

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGK+KQYSNVLD+PLSKGKQE VSLSAFAFLFSELVQYNQTQVDNIAELER RLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHST+WK+L
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

A0A7J7BW65 Trafficking protein particle complex subunit

1.1e-45

94.23

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGK+KQYSNVLDKPLSKGKQE VSLSAFAFLFSELVQYNQTQVDNI+ELERSRLEDAGYAVGARVLEL CHR+KGNRRE RLLGILSFVHSTVWKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

A0A7J7DTB6 Trafficking protein particle complex subunit

9.8e-47

96.15

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGK+KQYSNVLDKPLSKGKQE VSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLEL CHR+KGNRRETRLLGILSFVHSTVWKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

SwissProt top hits

e value

%identity

Alignment

Q2NL13 Trafficking protein particle complex subunit 5

9.2e-18

55.91

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Query:  SNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK
        S +L++ L++ + E VSLSAFA LFSELVQ+ Q++V  +AEL+ +RL   G  VGARVL+    REKG RRET++LG L FV   VWK LFGK
Subjt:  SNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK

Q54YG5 Trafficking protein particle complex subunit 5

4.6e-25

59.78

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Query:  NVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK
        N++D+PLSKGK E +++S+FAFLFSE++QY Q ++    ELE+ +L D GY++G R+LEL C REK ++RET+LLGILSF+H+TVWK LFGK
Subjt:  NVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK

Q8IUR0 Trafficking protein particle complex subunit 5

3.2e-18

56.99

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Query:  SNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK
        S +L++ L++ + E VSLSAFA LFSELVQ+ Q++V ++AEL+ SRL   G  VGARVL+    REKG RRET++LG L FV   VWK LFGK
Subjt:  SNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK

Q9CQA1 Trafficking protein particle complex subunit 5

1.6e-17

55.91

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Query:  SNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK
        S +L++ L + + E VSLSAFA LFSELVQ+ Q++V ++AEL+ +RL   G  VGARVL+    REKG RRET++LG L FV   VWK LFGK
Subjt:  SNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK

Q9P7N9 Transport protein particle subunit trs31

1.9e-18

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Query:  NVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK
        +V ++ L+K +   V+LS+FAF+FSEL+Q  Q+QV  I E E  +L + GY VG +++EL   RE+  +RETR+LGIL ++HS+VWK LFGK
Subjt:  NVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGK

Arabidopsis top hits

e value

%identity

Alignment

AT5G58030.1 Transport protein particle (TRAPP) component

6.7e-48

94.23

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Query:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL
        MIGVGKMKQYSNVLDKPLSKGKQE VSL+AFAFLFSELVQYNQTQVDNIAELER RLEDAGYAVG+RVLEL C+REKGNRRETRLLGILSFVHSTVWKVL
Subjt:  MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVL

Query:  FGKV
        FGKV
Subjt:  FGKV

Sequences

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CDS sequence

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ATGATTGGAGTTGGGAAGATGAAGCAGTACTCTAATGTCCTCGACAAACCTCTCAGCAAGGGCAAACAAGAGGTTGTGAGTTTGAGTGCGTTTGCATTCTTGTTCTCCGA
ACTTGTGCAGTACAATCAGACTCAGGTTGACAATATTGCCGAGTTAGAACGGAGCAGGTTGGAGGATGCAGGCTATGCAGTTGGTGCCCGAGTGTTGGAACTCTTTTGTC
ACCGAGAGAAGGGAAATAGAAGGGAGACACGATTATTAGGCATTCTGTCATTTGTACACAGCACAGTGTGGAAGGTTTTGTTTGGAAAGGTG

mRNA sequence

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Protein sequence

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MIGVGKMKQYSNVLDKPLSKGKQEVVSLSAFAFLFSELVQYNQTQVDNIAELERSRLEDAGYAVGARVLELFCHREKGNRRETRLLGILSFVHSTVWKVLFGKV

MS023052 (gene) of Bitter gourd (TR) v1 genome