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MS023066 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023066
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold775:143396..143668
RNA-Seq ExpressionMS023066
SyntenyMS023066
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037445.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-1145.05Show/hide
Query:  LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS
        L + + + RL+LKA LS L L ++  W Q+ KKLWL EGDEN SFFH++C++R+ RSFI    D++G    T+  I    I+ F+ IY  S
Subjt:  LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-1146.25Show/hide
Query:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY
        RL+LKA LS + L +  +W+QKCK++W+ EGDEN SFFHK+CTAR+ +  IS   +  G + + D  I    I++F  IY
Subjt:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-1146.25Show/hide
Query:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY
        RL+LKA LS + L K  +W+QKCK++W+ EGDEN SFFHK+CT R+ +  IS   +  G + + D  I    I++F  IY
Subjt:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY

TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.3e-1245.05Show/hide
Query:  LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS
        L + + + RL+LKA LS L L ++  W Q+ KKLWL EGDEN SFFH++C++R+ RSFI    D++G+   T+  I    I+ F+ IY  S
Subjt:  LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS

TYK29577.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-1145Show/hide
Query:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY
        R++LKA LS + L +  +W+QKCK++W+ EGDEN SFFHK+CTAR+ +  IS   +  G + + D  I    I++F  IY
Subjt:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY

TrEMBL top hitse value%identityAlignment
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.2e-1146.25Show/hide
Query:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY
        RL+LKA LS + L +  +W+QKCK++W+ EGDEN SFFHK+CTAR+ +  IS   +  G + + D  I    I++F  IY
Subjt:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.2e-1146.25Show/hide
Query:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY
        RL+LKA LS + L K  +W+QKCK++W+ EGDEN SFFHK+CT R+ +  IS   +  G + + D  I    I++F  IY
Subjt:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY

A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein4.0e-1245.05Show/hide
Query:  LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS
        L + + + RL+LKA LS L L ++  W Q+ KKLWL EGDEN SFFH++C++R+ RSFI    D++G+   T+  I    I+ F+ IY  S
Subjt:  LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS

A0A5D3BUZ3 LINE-1 retrotransposable element ORF2 protein1.5e-1145.05Show/hide
Query:  LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS
        L + + + RL+LKA LS L L ++  W Q+ KKLWL EGDEN SFFH++C++R+ RSFI    D++G    T+  I    I+ F+ IY  S
Subjt:  LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein6.9e-1245Show/hide
Query:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY
        R++LKA LS + L +  +W+QKCK++W+ EGDEN SFFHK+CTAR+ +  IS   +  G + + D  I    I++F  IY
Subjt:  RLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGACGAAACTGATTGCCATCTTCGTCTTTCCTTAAAAGCGAAGTTAAGCTTCCTCGTTTTAGCAAAGACAGGACTATGGAGTCAAAAATGCAAAAAGCTATGGTTGTT
GGAGGGAGACGAAAATCCATCTTTCTTTCACAAAATGTGCACTGCTAGAAAAGGTCGAAGCTTTATTTCAGTAAGCACAGATAAAAAAGGTAACAGTCTCATTACGGATT
TAGTGATTGAGAGAGAGGCAATACGGAATTTTACGAGCATTTATAATGGTTCC
mRNA sequenceShow/hide mRNA sequence
CTTGACGAAACTGATTGCCATCTTCGTCTTTCCTTAAAAGCGAAGTTAAGCTTCCTCGTTTTAGCAAAGACAGGACTATGGAGTCAAAAATGCAAAAAGCTATGGTTGTT
GGAGGGAGACGAAAATCCATCTTTCTTTCACAAAATGTGCACTGCTAGAAAAGGTCGAAGCTTTATTTCAGTAAGCACAGATAAAAAAGGTAACAGTCTCATTACGGATT
TAGTGATTGAGAGAGAGGCAATACGGAATTTTACGAGCATTTATAATGGTTCC
Protein sequenceShow/hide protein sequence
LDETDCHLRLSLKAKLSFLVLAKTGLWSQKCKKLWLLEGDENPSFFHKMCTARKGRSFISVSTDKKGNSLITDLVIEREAIRNFTSIYNGS