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MS023101 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023101
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S16
Genome locationscaffold78:121148..123274
RNA-Seq ExpressionMS023101
SyntenyMS023101
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590008.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.0e-6393.8Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS
        R VDPLSGR V+PEKPT+DSS KDGNADS
Subjt:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS

KAG7023670.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-6494.57Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS
        R VDPLSGR V+PEKPT+DSSSKDGNADS
Subjt:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]1.5e-67100Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS
        RPVDPLSGRFVTPEKPTDDSSSKDGNADS
Subjt:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS

XP_023516386.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo]9.2e-6596.12Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS
        R VDPLSGR V+PEKPTDDSSSKDGNADS
Subjt:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS

XP_038880699.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida]4.6e-6495.35Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS
        R VDPLSGRFVTPEKPTD SS KDG+ADS
Subjt:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS

TrEMBL top hitse value%identityAlignment
A0A5D3CDW9 30S ribosomal protein S168.7e-6189.23Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPE-KPTDDSSSKDGNADS
        RPVDPLSGRFVTPE KPTD S+ + G+ADS
Subjt:  RPVDPLSGRFVTPE-KPTDDSSSKDGNADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial7.3e-68100Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS
        RPVDPLSGRFVTPEKPTDDSSSKDGNADS
Subjt:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS

A0A6J1F6D0 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.4e-6394.62Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDS-SSKDGNADS
        RPVDPLSGRF TP+K TDDS SSKDGNADS
Subjt:  RPVDPLSGRFVTPEKPTDDS-SSKDGNADS

A0A6J1H8S5 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.4e-6393.8Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS
        R VDPLSGR V+PEKPT+DSS KDGNADS
Subjt:  RPVDPLSGRFVTPEKPTDDSSSKDGNADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.4e-6394.62Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPTDDS-SSKDGNADS
        RPVDPLSGRF TP+K TDDS SSKDG+ADS
Subjt:  RPVDPLSGRFVTPEKPTDDS-SSKDGNADS

SwissProt top hitse value%identityAlignment
A5V9P7 30S ribosomal protein S162.7e-1953.66Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV
        M V +RL+R G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K+WLSVGAQP++ V R L  AGV
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV

O65686 30S ribosomal protein S16-1, chloroplastic5.3e-3152.68Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V++RL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP++ V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSGRFV
         + V P++G  +
Subjt:  -RPVDPLSGRFV

Q16AN8 30S ribosomal protein S163.6e-1952.44Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV
        M +++RL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWL  GAQP++ V R+L  AG+
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV

Q5LNF2 30S ribosomal protein S162.1e-1953.01Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVL
        M +++RL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWLS GAQ ++ V R+L  AGV+
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial3.4e-5475Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPS+PVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPT---DDSSSKDGNADS
        RPVDP++GR+V  E  T   +D+  K+ + ++
Subjt:  RPVDPLSGRFVTPEKPT---DDSSSKDGNADS

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 163.8e-3252.68Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V++RL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP++ V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSGRFV
         + V P++G  +
Subjt:  -RPVDPLSGRFV

AT5G56940.1 Ribosomal protein S16 family protein2.4e-5575Show/hide
Query:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPS+PVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKPT---DDSSSKDGNADS
        RPVDP++GR+V  E  T   +D+  K+ + ++
Subjt:  RPVDPLSGRFVTPEKPT---DDSSSKDGNADS

ATCG00050.1 ribosomal protein S162.2e-0835.8Show/hide
Query:  VVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV
        +V+LRL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  +L  GAQP+     I  +AG+
Subjt:  VVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGAGGCTTCGATTGTCGAGGTTTGGCTGCAAGAACAAGCCATTTTACCGGGTAATGGCTGCCGATAGCCGATCTCCCAGGGACGGCAAGCATCTCGAGGTTCT
AGGTTACTATAATCCCCTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGGGTGAAGTATTGGCTTTCAGTTGGAGCTCAGCCCTCAGAACCTGTGC
AGCGTATTCTCTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTCGCAATGGCTCGTAAAGGTGGACCACGTGATACTCGACCCGTCGATCCTCTGAGTGGACGCTTT
GTGACTCCAGAGAAGCCAACTGATGATTCCAGTAGCAAAGATGGCAACGCCGATTCA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGAGGCTTCGATTGTCGAGGTTTGGCTGCAAGAACAAGCCATTTTACCGGGTAATGGCTGCCGATAGCCGATCTCCCAGGGACGGCAAGCATCTCGAGGTTCT
AGGTTACTATAATCCCCTGCCAGGTCAAGATGGCGGTAAACGAATGGGTCTTAATTTTGAAAGGGTGAAGTATTGGCTTTCAGTTGGAGCTCAGCCCTCAGAACCTGTGC
AGCGTATTCTCTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTCGCAATGGCTCGTAAAGGTGGACCACGTGATACTCGACCCGTCGATCCTCTGAGTGGACGCTTT
GTGACTCCAGAGAAGCCAACTGATGATTCCAGTAGCAAAGATGGCAACGCCGATTCA
Protein sequenceShow/hide protein sequence
MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF
VTPEKPTDDSSSKDGNADS