CuGenDBv2

Gene ID	MS023119
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II PsbX
Genome location	scaffold78:282623..282967
RNA-Seq Expression	MS023119
Synteny	MS023119
Gene Ontology terms	GO:0006811 - ion transport (biological process) GO:0015979 - photosynthesis (biological process) GO:0055085 - transmembrane transport (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023687.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-35

76.8

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Query:  MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI
        MASTSA+S+ALPLTN T     + AFF+PLP+       ++IAAAP SNG L+ VRSSLKEKA+TGLTAAALTASMVIPEVAEAAGPG+SPSLKNFLLSI
Subjt:  MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI

Query:  AAGGAVVVAIVGAVIGVSNFDPVKR
        AAGG VVVAI+GAVIGVSNFDPVKR
Subjt:  AAGGAVVVAIVGAVIGVSNFDPVKR

XP_008450907.1 PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]

4.4e-34

76.42

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Query:  MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG
        MASTSA+SMALP T+ T     + AFF+PLPS    + IAAAP SNGR++ VRSSLKEKAV G+TAAAL ASMVIPEVAEAAG G+SPSLKNFLLSIAAG
Subjt:  MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG

Query:  GAVVVAIVGAVIGVSNFDPVKRS
        GAVVVAI GAVIGV+NFDPVKRS
Subjt:  GAVVVAIVGAVIGVSNFDPVKRS

XP_022960741.1 uncharacterized protein LOC111461452 [Cucurbita moschata]

2.3e-35

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Query:  MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI
        MASTS +S+ALPLTN T     + AFF+PLP+       ++IAAAP S+GRL+ VRSSLKEKA+TGLTAAALTASMVIPEVAEAAGPG+SPSLKNFLLSI
Subjt:  MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI

Query:  AAGGAVVVAIVGAVIGVSNFDPVKR
        AAGG VVVAI+GAVIGVSNFDPVKR
Subjt:  AAGGAVVVAIVGAVIGVSNFDPVKR

XP_022987287.1 uncharacterized protein LOC111484883 [Cucurbita maxima]

2.0e-34

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Query:  MASTSALSMALPL---TNKTLST-AFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI
        MASTS +S+ALPL   T+K LS  AFF+PLP+       ++IAAAP SNGRL+ VRSSLKEKA+TG++AAALTASMVIPEVAEAAGPG+SPSLKNFLLSI
Subjt:  MASTSALSMALPL---TNKTLST-AFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI

Query:  AAGGAVVVAIVGAVIGVSNFDPVKR
        AAGG VVVAI+GAVIGVSNFDPVKR
Subjt:  AAGGAVVVAIVGAVIGVSNFDPVKR

XP_038878912.1 uncharacterized protein LOC120071001 [Benincasa hispida]

1.1e-37

82.11

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Query:  MASTSALSMALPL---TNKTLST-AFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG
        MASTSALSMALPL   T+K LS  AFF+PLPS    ++IAAAPKSNGR++ VRSSLKEKAV G+TAAALTASMVIPEVAEAAGPG+SPSLKNFLLSIAAG
Subjt:  MASTSALSMALPL---TNKTLST-AFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG

Query:  GAVVVAIVGAVIGVSNFDPVKRS
        GAVVVAI+GAVIGV+NFDPVKRS
Subjt:  GAVVVAIVGAVIGVSNFDPVKRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWL3 Uncharacterized protein

4.7e-34

75.61

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Query:  MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG
        MASTSALSMALP T+ T     + AFF+PLPS    + IA AP SNGR+L VRSS KEKAV G++AAALTASMVIPEVAEAAG G+SPSLKNFLLSIAAG
Subjt:  MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG

Query:  GAVVVAIVGAVIGVSNFDPVKRS
        G VVVAI+GAVIGV+NFDPVKRS
Subjt:  GAVVVAIVGAVIGVSNFDPVKRS

A0A1S3BRD2 uncharacterized protein LOC103492356

2.1e-34

76.42

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Query:  MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG
        MASTSA+SMALP T+ T     + AFF+PLPS    + IAAAP SNGR++ VRSSLKEKAV G+TAAAL ASMVIPEVAEAAG G+SPSLKNFLLSIAAG
Subjt:  MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG

Query:  GAVVVAIVGAVIGVSNFDPVKRS
        GAVVVAI GAVIGV+NFDPVKRS
Subjt:  GAVVVAIVGAVIGVSNFDPVKRS

A0A2P5C1D0 Photosystem II PsbX

2.6e-32

72.36

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Query:  MASTSALSMALPLTNKT-----LSTAFFSPL---PSRSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG
        MA+TSA+SMALPLTN +      S AF  PL   PS++++AAP+S+G+ L VR+SLKEKAVTG+TAAA+TASMVIP+VAEAAGPG+SPSLKNFLLSI AG
Subjt:  MASTSALSMALPLTNKT-----LSTAFFSPL---PSRSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAG

Query:  GAVVVAIVGAVIGVSNFDPVKRS
        G VV AIVGAVIGV+NFDPVKRS
Subjt:  GAVVVAIVGAVIGVSNFDPVKRS

A0A6J1H8G2 uncharacterized protein LOC111461452

1.1e-35

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Query:  MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI
        MASTS +S+ALPLTN T     + AFF+PLP+       ++IAAAP S+GRL+ VRSSLKEKA+TGLTAAALTASMVIPEVAEAAGPG+SPSLKNFLLSI
Subjt:  MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI

Query:  AAGGAVVVAIVGAVIGVSNFDPVKR
        AAGG VVVAI+GAVIGVSNFDPVKR
Subjt:  AAGGAVVVAIVGAVIGVSNFDPVKR

A0A6J1J9Y5 uncharacterized protein LOC111484883

9.5e-35

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Query:  MASTSALSMALPL---TNKTLST-AFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI
        MASTS +S+ALPL   T+K LS  AFF+PLP+       ++IAAAP SNGRL+ VRSSLKEKA+TG++AAALTASMVIPEVAEAAGPG+SPSLKNFLLSI
Subjt:  MASTSALSMALPL---TNKTLST-AFFSPLPS-------RSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSI

Query:  AAGGAVVVAIVGAVIGVSNFDPVKR
        AAGG VVVAI+GAVIGVSNFDPVKR
Subjt:  AAGGAVVVAIVGAVIGVSNFDPVKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

1.1e-27

61.54

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Query:  MASTSALSMALPLTNKTLSTAFFSPLPSRSIAAAPKSNGRL--LVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVA
        MASTSA+S+  PL N+T S+ F  PLP +   A   + GR   L V++   +KA+TG++AAALTASMVIPE+AEAAG GISPSLKNFLLSIA+GG V+  
Subjt:  MASTSALSMALPLTNKTLSTAFFSPLPSRSIAAAPKSNGRL--LVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVA

Query:  IVGAVIGVSNFDPVKRS
        I+G V+GVSNFDPVKR+
Subjt:  IVGAVIGVSNFDPVKRS

Sequences

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CDS sequence

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ATGGCGTCAACTTCTGCACTTTCAATGGCCCTGCCGTTGACCAACAAGACCCTCTCCACCGCCTTCTTCAGTCCATTGCCATCCAGGTCGATCGCCGCCGCCCCGAAATC
CAACGGCAGGCTCCTCGTCGTCCGATCGTCCTTGAAGGAGAAGGCCGTCACCGGACTCACGGCCGCCGCGCTGACGGCGTCGATGGTGATTCCGGAGGTTGCTGAGGCTG
CCGGTCCTGGAATTTCTCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGCGGTGGTGGTCGCCATAGTCGGAGCTGTTATCGGCGTGTCGAACTTCGAT
CCGGTCAAGCGTAGC

mRNA sequence

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Protein sequence

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MASTSALSMALPLTNKTLSTAFFSPLPSRSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNFD
PVKRS

MS023119 (gene) of Bitter gourd (TR) v1 genome