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MS023134 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023134
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFRIGIDA interacting protein 1
Genome locationscaffold78:379897..381068
RNA-Seq ExpressionMS023134
SyntenyMS023134
Gene Ontology termsGO:0005765 - lysosomal membrane (cellular component)
GO:0005770 - late endosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR029399 - TMEM192 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590036.1 Protein FIP1, partial [Cucurbita argyrosperma subsp. sororia]4.8e-4190.91Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEI+K LTTNKQYVEENERLRAILGEWSTRAAKLERALE ER SNLELQKR+S L+K SH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        AS TSEQQ S
Subjt:  ASATSEQQES

KAG7023699.1 Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma]4.8e-4190.91Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEI+K LTTNKQYVEENERLRAILGEWSTRAAKLERALE ER SNLELQKR+S L+K SH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        AS TSEQQ S
Subjt:  ASATSEQQES

XP_022147717.1 uncharacterized protein LOC111016583 [Momordica charantia]1.7e-4699.09Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSN+ELQKRVSALRKQSH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        ASATSEQQES
Subjt:  ASATSEQQES

XP_022961271.1 uncharacterized protein LOC111461818 isoform X2 [Cucurbita moschata]4.8e-4190.91Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEI+K LTTNKQYVEENERLRAILGEWSTRAAKLERALE ER SNLELQKR+S L+K SH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        AS TSEQQ S
Subjt:  ASATSEQQES

XP_022988290.1 uncharacterized protein LOC111485584 isoform X1 [Cucurbita maxima]4.8e-4190.91Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEI+K LTTNKQYVEENERLRAILGEWSTRAAKLERALE ER SNLELQKR+S L+K SH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        AS TSEQQ S
Subjt:  ASATSEQQES

TrEMBL top hitse value%identityAlignment
A0A6J1D357 uncharacterized protein LOC1110165838.2e-4799.09Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSN+ELQKRVSALRKQSH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        ASATSEQQES
Subjt:  ASATSEQQES

A0A6J1H9W4 uncharacterized protein LOC111461818 isoform X22.3e-4190.91Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEI+K LTTNKQYVEENERLRAILGEWSTRAAKLERALE ER SNLELQKR+S L+K SH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        AS TSEQQ S
Subjt:  ASATSEQQES

A0A6J1HBP9 uncharacterized protein LOC111461818 isoform X12.3e-4190.91Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEI+K LTTNKQYVEENERLRAILGEWSTRAAKLERALE ER SNLELQKR+S L+K SH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        AS TSEQQ S
Subjt:  ASATSEQQES

A0A6J1JCN1 uncharacterized protein LOC111485584 isoform X22.3e-4190.91Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEI+K LTTNKQYVEENERLRAILGEWSTRAAKLERALE ER SNLELQKR+S L+K SH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        AS TSEQQ S
Subjt:  ASATSEQQES

A0A6J1JJ60 uncharacterized protein LOC111485584 isoform X12.3e-4190.91Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH
        QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEI+K LTTNKQYVEENERLRAILGEWSTRAAKLERALE ER SNLELQKR+S L+K SH
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSH

Query:  ASATSEQQES
        AS TSEQQ S
Subjt:  ASATSEQQES

SwissProt top hitse value%identityAlignment
Q8S8K9 Protein FIP11.5e-3275Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRV-SALRKQS
        QVDLAH+LAARDQELRTLSAEMNQ+ SELRLARS+IAERD E+++  +TN QY+EENERLRAIL EWS RAA LERALEVER SN ELQK V S  RKQ 
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRV-SALRKQS

Query:  HASATSEQ
          + TSEQ
Subjt:  HASATSEQ

Arabidopsis top hitse value%identityAlignment
AT2G06005.1 FRIGIDA interacting protein 11.0e-3375Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRV-SALRKQS
        QVDLAH+LAARDQELRTLSAEMNQ+ SELRLARS+IAERD E+++  +TN QY+EENERLRAIL EWS RAA LERALEVER SN ELQK V S  RKQ 
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRV-SALRKQS

Query:  HASATSEQ
          + TSEQ
Subjt:  HASATSEQ

AT2G06005.2 FRIGIDA interacting protein 11.0e-3375Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRV-SALRKQS
        QVDLAH+LAARDQELRTLSAEMNQ+ SELRLARS+IAERD E+++  +TN QY+EENERLRAIL EWS RAA LERALEVER SN ELQK V S  RKQ 
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRV-SALRKQS

Query:  HASATSEQ
          + TSEQ
Subjt:  HASATSEQ

AT5G20580.1 BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1)7.4e-3275.51Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQ
        QVDLAH++A RDQELRTLSAE++Q+ SEL LARS+I+ERD EI+    TN QYV ENERLRAILGEWS RAAKLERALEVER SN+EL+K+VSALR Q
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQ

AT5G20580.2 BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1)7.4e-3275.51Show/hide
Query:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQ
        QVDLAH++A RDQELRTLSAE++Q+ SEL LARS+I+ERD EI+    TN QYV ENERLRAILGEWS RAAKLERALEVER SN+EL+K+VSALR Q
Subjt:  QVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGCTCATTTTCAGGTTGATCTTGCACATATGCTAGCTGCTCGTGATCAGGAATTGCGGACGCTCTCAGCTGAGATGAATCAGGTGACATCAGAACTTAGGCTTGCTCG
ATCTGTAATAGCTGAGAGGGATACTGAGATTCGGAAGTTTCTCACCACCAACAAGCAGTACGTGGAAGAAAATGAAAGACTGAGAGCTATTCTTGGAGAATGGAGTACAC
GGGCTGCAAAGCTCGAGAGAGCGCTTGAAGTCGAGCGTAAATCAAATCTTGAATTGCAAAAGAGGGTTTCAGCATTAAGAAAGCAATCACATGCATCTGCAACATCAGAG
CAGCAGGAGAGT
mRNA sequenceShow/hide mRNA sequence
TGGGCTCATTTTCAGGTTGATCTTGCACATATGCTAGCTGCTCGTGATCAGGAATTGCGGACGCTCTCAGCTGAGATGAATCAGGTGACATCAGAACTTAGGCTTGCTCG
ATCTGTAATAGCTGAGAGGGATACTGAGATTCGGAAGTTTCTCACCACCAACAAGCAGTACGTGGAAGAAAATGAAAGACTGAGAGCTATTCTTGGAGAATGGAGTACAC
GGGCTGCAAAGCTCGAGAGAGCGCTTGAAGTCGAGCGTAAATCAAATCTTGAATTGCAAAAGAGGGTTTCAGCATTAAGAAAGCAATCACATGCATCTGCAACATCAGAG
CAGCAGGAGAGT
Protein sequenceShow/hide protein sequence
WAHFQVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIRKFLTTNKQYVEENERLRAILGEWSTRAAKLERALEVERKSNLELQKRVSALRKQSHASATSE
QQES