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MS023138 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023138
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-box protein 1a
Genome locationscaffold78:423165..424399
RNA-Seq ExpressionMS023138
SyntenyMS023138
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0031461 - cullin-RING ubiquitin ligase complex (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0016462 - pyrophosphatase activity (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144035.1 RING-box protein 1a [Cucumis sativus]3.9e-6297.44Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLD+DV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

XP_022147540.1 RING-box protein 1a [Momordica charantia]6.0e-6399.15Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVSMVPAGEASSSAGP SSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

XP_022933228.1 RING-box protein 1a [Cucurbita moschata]1.7e-6298.29Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

XP_023880628.1 RING-box protein 1a [Quercus suber]3.0e-6297.44Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MVP GEASSSAGPSSSKK+KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

XP_027926839.1 RING-box protein 1a isoform X2 [Vigna unguiculata]3.9e-6297.44Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV+MVPAGE SSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

TrEMBL top hitse value%identityAlignment
A0A2N9HDW3 RING-type domain-containing protein1.4e-6297.44Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MVP GEASSSAGPSSSKK+KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

A0A5D3CFD3 RING-box protein 1a1.9e-6297.44Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLD+DV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

A0A6J1D0F3 RING-box protein 1a2.9e-6399.15Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVSMVPAGEASSSAGP SSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

A0A6J1F460 RING-box protein 1a8.4e-6398.29Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

A0A6J1I027 RING-box protein 1a8.4e-6398.29Show/hide
Query:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

SwissProt top hitse value%identityAlignment
P62877 E3 ubiquitin-protein ligase RBX11.3e-5284.26Show/hide
Query:  MVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKYGH
        WEFQKYGH
Subjt:  WEFQKYGH

P62878 E3 ubiquitin-protein ligase RBX11.3e-5284.26Show/hide
Query:  MVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKYGH
        WEFQKYGH
Subjt:  WEFQKYGH

Q940X7 RING-box protein 1a9.0e-6293.22Show/hide
Query:  MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MATLDSDV+M+PAGEASSS A  SS+KK+KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKYGH
        RQVCPLDNSEWEFQKYGH
Subjt:  RQVCPLDNSEWEFQKYGH

Q9M2B0 RING-box protein 1b9.0e-5485.59Show/hide
Query:  MATLDSDVSMVPAGEASSSAGP-SSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MA+L+SDV M   GE+SS + P SSSK SKRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVSMVPAGEASSSAGP-SSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKYGH
        RQVCPLD  EWEFQKYGH
Subjt:  RQVCPLDNSEWEFQKYGH

Q9W5E1 RING-box protein 1A3.8e-5292.86Show/hide
Query:  PSSSKK--SKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        PSSS K   KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Subjt:  PSSSKK--SKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Arabidopsis top hitse value%identityAlignment
AT3G05870.1 anaphase-promoting complex/cyclosome 115.8e-1639.56Show/hide
Query:  KSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK
        K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+  +T Q  CP+   EW+F++
Subjt:  KSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK

AT3G42830.1 RING/U-box superfamily protein6.4e-5585.59Show/hide
Query:  MATLDSDVSMVPAGEASSSAGP-SSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MA+L+SDV M   GE+SS + P SSSK SKRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVSMVPAGEASSSAGP-SSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKYGH
        RQVCPLD  EWEFQKYGH
Subjt:  RQVCPLDNSEWEFQKYGH

AT5G20570.1 RING-box 16.4e-6393.22Show/hide
Query:  MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MATLDSDV+M+PAGEASSS A  SS+KK+KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKYGH
        RQVCPLDNSEWEFQKYGH
Subjt:  RQVCPLDNSEWEFQKYGH

AT5G20570.2 RING-box 17.3e-5977.46Show/hide
Query:  MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW------------------
        MATLDSDV+M+PAGEASSS A  SS+KK+KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW                  
Subjt:  MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW------------------

Query:  ------GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
              GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  ------GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

AT5G20570.3 RING-box 19.5e-5980.15Show/hide
Query:  MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
        MATLDSDV+M+PAGEASSS A  SS+KK+KRFEIKKW+AVALWAW                   IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Subjt:  MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW

Query:  GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACGTTGGATTCCGATGTGTCAATGGTTCCCGCTGGTGAGGCTTCGAGTAGTGCTGGCCCTTCATCTTCCAAGAAGTCTAAGCGATTCGAAATCAAGAAGTGGAA
TGCTGTCGCGCTCTGGGCTTGGGATATCGTGGTCGATAATTGTGCAATCTGTAGGAATCACATAATGGATCTCTGCATTGAATGTCAGGCAAATCAGGCGAGCGCCACTA
GTGAGGAGTGTACTGTCGCCTGGGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACCCGCCAAGTCTGTCCATTGGATAACAGTGAATGG
GAGTTCCAGAAGTATGGACAT
mRNA sequenceShow/hide mRNA sequence
ATGGCTACGTTGGATTCCGATGTGTCAATGGTTCCCGCTGGTGAGGCTTCGAGTAGTGCTGGCCCTTCATCTTCCAAGAAGTCTAAGCGATTCGAAATCAAGAAGTGGAA
TGCTGTCGCGCTCTGGGCTTGGGATATCGTGGTCGATAATTGTGCAATCTGTAGGAATCACATAATGGATCTCTGCATTGAATGTCAGGCAAATCAGGCGAGCGCCACTA
GTGAGGAGTGTACTGTCGCCTGGGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACCCGCCAAGTCTGTCCATTGGATAACAGTGAATGG
GAGTTCCAGAAGTATGGACAT
Protein sequenceShow/hide protein sequence
MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW
EFQKYGH