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MS023168 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023168
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold78:633919..634161
RNA-Seq ExpressionMS023168
SyntenyMS023168
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5458995.1 hypothetical protein F2P56_022987 [Juglans regia]3.1e-1855.56Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP
        WR+LS+PSSL+A+VLK KYF+N D L AR     S IWRS+    DLL+ G  WRVGNGKS+R++ D W+P   S  I+SP
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP

XP_022149385.1 uncharacterized protein LOC111017816 [Momordica charantia]2.8e-1955.56Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP
        WR++ D SSLLA  LK +YFKN  FL A  GSN S+IWRSL +GR +L++G  WRVG+G ++ +Y  NWIP DG+L + SP
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP

XP_022159057.1 uncharacterized protein LOC111025497 [Momordica charantia]2.2e-2470Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRS
        W++ SDPSSLLA VLKFKYFKN DF+ A  GS ASFIWRSL  G DLLR G  WRVGNG +IR+Y DNWIP DG LS++S
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRS

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]5.3e-1856.34Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIP
        WRLL  P+SL++RVL+ +YF+N  FL A+AG+NAS+IWRS+  GR +++ G  WR+GNGK I ++SDNW+P
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIP

XP_042944517.1 uncharacterized protein LOC122278389 [Carya illinoinensis]8.2e-1953.09Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP
        WR++  PSSL ARVLK KYF   DFL A+ GSNASF+WRS  + R +L+ G  WR+GNG S+ +++D WIP   S  ++SP
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP

TrEMBL top hitse value%identityAlignment
A0A2I0A354 Ribonuclease H protein7.5e-1854.88Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSL-SIRSP
        WR+++  +SL+ARVLK KYF N DFL A+A  N+S+IWRS+  GRDLL+ G  WR+GNG S+RV+ D W+P   S  +I SP
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSL-SIRSP

A0A6J1D5K1 uncharacterized protein LOC1110178161.4e-1955.56Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP
        WR++ D SSLLA  LK +YFKN  FL A  GSN S+IWRSL +GR +L++G  WRVG+G ++ +Y  NWIP DG+L + SP
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP

A0A6J1DAR4 uncharacterized protein LOC1110189545.7e-1851.25Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRS
        WR+L+ P+S+L+RVLK +YFK+  F+ A+   N S+IWRS+  GRDLL+ G  WR+GNG S+ +Y DNW+P   +L I S
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRS

A0A6J1DYS7 uncharacterized protein LOC1110254971.1e-2470Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRS
        W++ SDPSSLLA VLKFKYFKN DF+ A  GS ASFIWRSL  G DLLR G  WRVGNG +IR+Y DNWIP DG LS++S
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRS

A0A803Q7Q3 Uncharacterized protein7.5e-1850.62Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP
        WRL+  P SLLARVLK  Y+ N  FL+A+   NAS IW+ +  GRD++  G WWRVGNG++IRV+ D W+P      I  P
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003101.0e-0834.29Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWI
        +R++  P +LL+R+L+ +YF +   +    G+  S+ WRS+  GR+LL  G    +G+G   +V+ D WI
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWI

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein9.3e-1342.86Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWI
        WR+LS P SL+A+V K +YF   D L+A  GS  SF+W+S+   +++LR G    VGNG+ I ++   W+
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWI

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.4e-1034.29Show/hide
Query:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWI
        +R++  P +LL+R+L+ +YF +   +    G+  S+ WRS+  GR+LL  G    +G+G   +V+ D WI
Subjt:  WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGCGGCTTCTCTCTGACCCGTCTTCTCTCCTTGCCCGAGTTCTGAAGTTCAAATATTTTAAGAATGGTGATTTTCTGAGTGCTAGGGCAGGGTCCAATGCTTCTTTCAT
ATGGCGGAGTCTCTTTCAGGGTCGGGATCTTCTTCGTGCTGGTCCTTGGTGGAGAGTGGGCAACGGTAAGTCCATTAGAGTTTATTCTGATAATTGGATTCCCATGGATG
GGTCTTTGTCCATTCGCTCACCG
mRNA sequenceShow/hide mRNA sequence
TGGCGGCTTCTCTCTGACCCGTCTTCTCTCCTTGCCCGAGTTCTGAAGTTCAAATATTTTAAGAATGGTGATTTTCTGAGTGCTAGGGCAGGGTCCAATGCTTCTTTCAT
ATGGCGGAGTCTCTTTCAGGGTCGGGATCTTCTTCGTGCTGGTCCTTGGTGGAGAGTGGGCAACGGTAAGTCCATTAGAGTTTATTCTGATAATTGGATTCCCATGGATG
GGTCTTTGTCCATTCGCTCACCG
Protein sequenceShow/hide protein sequence
WRLLSDPSSLLARVLKFKYFKNGDFLSARAGSNASFIWRSLFQGRDLLRAGPWWRVGNGKSIRVYSDNWIPMDGSLSIRSP