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MS023229 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023229
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L30
Genome locationscaffold78:1165958..1167210
RNA-Seq ExpressionMS023229
SyntenyMS023229
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR022991 - Ribosomal protein L30e, conserved site
IPR029064 - 50S ribosomal protein L30e-like
IPR039109 - Ribosomal protein L30/YlxQ


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT83133.1 hypothetical protein VIGAN_04023700 [Vigna angularis var. angularis]2.5e-4978.52Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP--GTLFSD
        KKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDP  G L S 
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP--GTLFSD

Query:  QVSVFGRPPLRNVLIVEFEWL-SGDSDIIKSIPGE
           + G      V ++ F ++ SGDSDIIK++PGE
Subjt:  QVSVFGRPPLRNVLIVEFEWL-SGDSDIIKSIPGE

KAG6590249.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4778.03Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIKS+PGE
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

XP_022157366.1 60S ribosomal protein L30 [Momordica charantia]6.2e-4878.79Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIKSIPGE
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]3.6e-4878.2Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES
                            GDSDIIKS+PGES
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]4.8e-4878.2Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES
                            GDSDIIKS+PGES
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES

TrEMBL top hitse value%identityAlignment
A0A0S3RRC1 Ribosomal_L7Ae domain-containing protein1.2e-4978.52Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP--GTLFSD
        KKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDP  G L S 
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP--GTLFSD

Query:  QVSVFGRPPLRNVLIVEFEWL-SGDSDIIKSIPGE
           + G      V ++ F ++ SGDSDIIK++PGE
Subjt:  QVSVFGRPPLRNVLIVEFEWL-SGDSDIIKSIPGE

A0A6J1DXV1 60S ribosomal protein L303.0e-4878.79Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIKSIPGE
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

A0A6J1H9H7 60S ribosomal protein L30-like1.8e-4878.2Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES
                            GDSDIIKS+PGES
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES

A0A6J1HXQ4 60S ribosomal protein L308.8e-4877.44Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES
                            GDSDIIKSIPG+S
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES

A0A6J1JJ11 60S ribosomal protein L30-like1.8e-4878.2Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES
                            GDSDIIKS+PGES
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGES

SwissProt top hitse value%identityAlignment
O48558 60S ribosomal protein L301.1e-4266.67Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK KL+IIANNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIK+ PGE
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

O49884 60S ribosomal protein L302.2e-4873.48Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIK++PG+
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

Q8VZ19 60S ribosomal protein L30-21.3e-4367.42Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIKSIPG+
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

Q9C8F7 Putative 60S ribosomal protein L30-11.1e-4265.91Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIKS+PG+
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

Q9M5M6 60S ribosomal protein L304.6e-4671.21Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KKTHESIN+RLALVMKSGK+TLGYKTVL++LR++KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID         
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                           +GDSDIIKSIPG+
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

Arabidopsis top hitse value%identityAlignment
AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein7.6e-4465.91Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIKS+PG+
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein9.0e-4567.42Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIKSIPG+
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.7e-4365.15Show/hide
Query:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV
        KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DP        
Subjt:  KKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQV

Query:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE
                            GDSDIIK++PG+
Subjt:  SVFGRPPLRNVLIVEFEWLSGDSDIIKSIPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACATTGGGATACAAAACCGTCCTGAAGACCTTGAGGAACTCTAAAGG
TAAGCTGATTATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGAGTATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAATGTAG
ACCTTGGGACTGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCAGGTACACTTTTCTCTGATCAAGTTTCTGTTTTTGGACGACCTCCCTTACGT
AACGTTTTGATTGTGGAATTTGAATGGCTTTCAGGTGATTCGGATATCATCAAGAGCATTCCTGGAGAAAGT
mRNA sequenceShow/hide mRNA sequence
CAGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACATTGGGATACAAAACCGTCCTGAAGACCTTGAGGAACTCTAAAGG
TAAGCTGATTATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATCGAGTATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAATGTAG
ACCTTGGGACTGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCAGGTACACTTTTCTCTGATCAAGTTTCTGTTTTTGGACGACCTCCCTTACGT
AACGTTTTGATTGTGGAATTTGAATGGCTTTCAGGTGATTCGGATATCATCAAGAGCATTCCTGGAGAAAGT
Protein sequenceShow/hide protein sequence
QKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGTLFSDQVSVFGRPPLR
NVLIVEFEWLSGDSDIIKSIPGES