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MS023235 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023235
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionlamin-like protein
Genome locationscaffold78:1229712..1230874
RNA-Seq ExpressionMS023235
SyntenyMS023235
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0046658 - anchored component of plasma membrane (cellular component)
GO:0009055 - electron transfer activity (molecular function)
InterPro domainsIPR003245 - Phytocyanin domain
IPR008972 - Cupredoxin
IPR039391 - Phytocyanin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451094.1 PREDICTED: lamin-like protein [Cucumis melo]1.4e-6372Show/hide
Query:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR
        MFG  MA  V +   +V +GWLLCGVEG+ PVLH VGGGKYTW  N+NFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVN+TSYE+CN+KDFIFNIT+GGR
Subjt:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR

Query:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEE---SPPNNNSPPNLPKMS-NLSPSILQPLFSLPLLLFTIIANF
        DVFNLT+AK YYFLSGRGFC+QGMK+AVFVEE    PP   SPPNLPK + NLSPS L+PL  +P     +IA +
Subjt:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEE---SPPNNNSPPNLPKMS-NLSPSILQPLFSLPLLLFTIIANF

XP_022157364.1 lamin-like protein [Momordica charantia]3.1e-9297.14Show/hide
Query:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR
        MFGIVMAE    AVAMVALGWLLCGVEGRDP+LHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR
Subjt:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR

Query:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF
        DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF
Subjt:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF

XP_023516910.1 lamin-like protein [Cucurbita pepo subsp. pepo]2.2e-6171.43Show/hide
Query:  MFGIV--MAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG
        MFG+   +A    VAV +   GWLL GVEGR+PVLHRVGGGKYTW  NVNFTDWSIHEHFYVGDWLYFGFDK IYNVL+VN+TSY+SCNE DF+FN+TRG
Subjt:  MFGIV--MAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG

Query:  GRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSI--LQPLFSLPLLL
        GRDVFNLTQAKPYYFLSGRGFC+QGMK+A+FVE+SPP ++     P++SN S SI  L+PL SL +L+
Subjt:  GRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSI--LQPLFSLPLLL

XP_031736018.1 lamin-like protein [Cucumis sativus]2.0e-6272.57Show/hide
Query:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR
        MFG+  AEA+ V   ++ +GWLL GVEG+ PVLH VGGGKYTW  N+NFTDWSIH+HFYVGDWLYFGFDKHIYNVLEVN+TSYE+CNEKDFIFNIT+GGR
Subjt:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR

Query:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEE-SPPNNN--SPPNLPK-MSNLSPSILQPLFSLPLLLFTIIANF
        DVFNLT+AK YYFLSGRGFC+QGMK+AVFVEE SPP +   S PNLPK  SNLSPS L+PL  +P   F +IA +
Subjt:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEE-SPPNNN--SPPNLPK-MSNLSPSILQPLFSLPLLLFTIIANF

XP_038880463.1 lamin-like protein [Benincasa hispida]2.1e-6477.11Show/hide
Query:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR
        MFG+ + EAV   VAM   GWLL G EGR PVLHRVGGGKYTW  N+NFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVN+TSYESCN+K FIFN+TRGGR
Subjt:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR

Query:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLF--SLPLLL
        DVFNLT+AK YYFLSGRGFC+QGMK+AVFVEESPP   SPPNLP + N SPS LQPL    LPL +
Subjt:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLF--SLPLLL

TrEMBL top hitse value%identityAlignment
A0A1S3BQT0 lamin-like protein6.7e-6472Show/hide
Query:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR
        MFG  MA  V +   +V +GWLLCGVEG+ PVLH VGGGKYTW  N+NFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVN+TSYE+CN+KDFIFNIT+GGR
Subjt:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR

Query:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEE---SPPNNNSPPNLPKMS-NLSPSILQPLFSLPLLLFTIIANF
        DVFNLT+AK YYFLSGRGFC+QGMK+AVFVEE    PP   SPPNLPK + NLSPS L+PL  +P     +IA +
Subjt:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEE---SPPNNNSPPNLPKMS-NLSPSILQPLFSLPLLLFTIIANF

A0A2P6QEZ3 Putative cupredoxin3.6e-4969.05Show/hide
Query:  VAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAK
        +++ V ++ +  +   VE R+PVLHRVGGG++TWAP++NFTDWS  EHFYVGDWLYFGFDKHIYNVLEVN TSYE+C +K++I+N+TRGGRDVFNLT+AK
Subjt:  VAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAK

Query:  PYYFLSGRGFCYQGMKLAVFVEESPP
         YYFL GRG+CY+GMK+AVFVE++PP
Subjt:  PYYFLSGRGFCYQGMKLAVFVEESPP

A0A6J1DWA4 lamin-like protein1.5e-9297.14Show/hide
Query:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR
        MFGIVMAE    AVAMVALGWLLCGVEGRDP+LHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR
Subjt:  MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGR

Query:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF
        DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF
Subjt:  DVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF

A0A6J1HAJ6 lamin-like protein1.4e-6171.43Show/hide
Query:  MFGIVM--AEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG
        MFG+ +       VAV +   GWLL GVEGR+PVLHRVGGGKYTW  NVNFTDWSIHEHFYVGDWLYFGFDK IYNVL+VN+TSY+SCNE DF+FN+TRG
Subjt:  MFGIVM--AEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG

Query:  GRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSI--LQPLFSLPLLL
        GRDVFNLTQAKPYYFLSGRGFC+QGMK+A+FVE+SPP ++     PK+SN S SI  L+PL SL +L+
Subjt:  GRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSI--LQPLFSLPLLL

A0A6J1JLN0 lamin-like protein2.0e-6067.05Show/hide
Query:  MFGIV--MAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG
        MFG+   +A    V V +   GWLL GV+GR PVLHRVGGGKYTW  N+NFTDWSIHEHFYVGDWLYFGFDK IYNVL+VN+TSY+SCNE DF+FN+TRG
Subjt:  MFGIV--MAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG

Query:  GRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSI--LQPLFSLPLLLFTIIANFI
        GRDVFNLTQAKPYYFLSGRGFC+QGMK+A+FVE+SPP ++     PK++N S SI  L+PL SL L +      F+
Subjt:  GRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSI--LQPLFSLPLLLFTIIANFI

SwissProt top hitse value%identityAlignment
P80728 Mavicyanin7.2e-0730.69Show/hide
Query:  LHRVGGGK-YTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSG-RGFCYQGMKLAVFV
        +H+VG    +T     ++  W+    F+VGD L F ++   +NVL+V++  ++SCN      + T  G D   L +   +YFL G  G C  G K+ + V
Subjt:  LHRVGGGK-YTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSG-RGFCYQGMKLAVFV

Query:  E
        +
Subjt:  E

Q39131 Lamin-like protein1.5e-2542.86Show/hide
Query:  MAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFN
        MA    +  A+V    +   + G     + VG  K+ W PN+N+T W+  +HFY+GDWLYF FD++ +N+LEVN+T YE C     I N TRG GRD+  
Subjt:  MAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFN

Query:  LTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNL-SPSILQPL--FSLPLLLFTIIA
        L Q K YY L G+G CY GMKL+V VE+ PP    PP    + N+ S S++  L  F +P+ LF   A
Subjt:  LTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNL-SPSILQPL--FSLPLLLFTIIA

Q9T076 Early nodulin-like protein 29.1e-1031.97Show/hide
Query:  GGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSG-RGFCYQGMKL-AVFVEESP
        G G +   P  N+  WS    F V D LYF + K   +VLEVN+  Y++CN K+ I  +  G  ++ +L +  P+YF+SG    C +G KL  V +    
Subjt:  GGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSG-RGFCYQGMKL-AVFVEESP

Query:  PNNNSPPNLPKMSNLSPSILQP
        P+    P+     + +P  + P
Subjt:  PNNNSPPNLPKMSNLSPSILQP

Arabidopsis top hitse value%identityAlignment
AT2G27035.1 early nodulin-like protein 203.6e-3853.28Show/hide
Query:  LHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEE
        LHRVGGG+YTW  +VNF+DW+ H+ FY GDWLYFGF++  +N+L+VN++SYE C + D+IFNITRGGRDVF L + KPYYF+ GRG+C +GMKLA+ V  
Subjt:  LHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEE

Query:  SPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIA
         PP  ++P N    S  +P I     +  +L+F   A
Subjt:  SPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIA

AT3G01070.1 early nodulin-like protein 161.2e-2547.41Show/hide
Query:  VAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFNLTQA
        VAV VA   L +LL            VG  K+ W PN+N+T W+  +HFY+ DWLYF ++++ YNV+EVNET+Y SCN  + I N +RG GRD+ +L   
Subjt:  VAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFNLTQA

Query:  KPYYFLSGR-GFCYQGMKLAVFVEESPPNNNSPPN
        + YY +SG  G CY GMKLAV VE+ PP   + PN
Subjt:  KPYYFLSGR-GFCYQGMKLAVFVEESPPNNNSPPN

AT4G12880.1 early nodulin-like protein 191.8e-2444.78Show/hide
Query:  VAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFNLTQAKP
        V ++ V L +L+            + G K  W PN+N+T W+  +HFYVGDWLYF F +  +N+LEVN+  YE C     I N TRG GRD+  L + + 
Subjt:  VAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFNLTQAKP

Query:  YYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLP
        YY L GRG C QGMKL V VE  PP    PP  P
Subjt:  YYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLP

AT4G12880.2 early nodulin-like protein 192.6e-1246.59Show/hide
Query:  FYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLP
        F+    L F F +  +N+LEVN+  YE C     I N TRG GRD+  L + + YY L GRG C QGMKL V VE  PP    PP  P
Subjt:  FYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFNLTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLP

AT5G15350.1 early nodulin-like protein 171.1e-2642.86Show/hide
Query:  MAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFN
        MA    +  A+V    +   + G     + VG  K+ W PN+N+T W+  +HFY+GDWLYF FD++ +N+LEVN+T YE C     I N TRG GRD+  
Subjt:  MAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRG-GRDVFN

Query:  LTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNL-SPSILQPL--FSLPLLLFTIIA
        L Q K YY L G+G CY GMKL+V VE+ PP    PP    + N+ S S++  L  F +P+ LF   A
Subjt:  LTQAKPYYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNL-SPSILQPL--FSLPLLLFTIIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGGATCGTCATGGCAGAGGCGGTGGCCGTGGCGGTGGCAATGGTGGCGCTCGGGTGGTTGTTGTGTGGAGTTGAGGGTAGAGATCCGGTGCTCCATAGGGTTGG
AGGAGGAAAATACACTTGGGCGCCTAATGTTAACTTCACTGATTGGTCGATTCACGAGCACTTCTACGTTGGTGATTGGCTTTATTTTGGGTTCGATAAGCATATCTACA
ACGTGTTGGAAGTGAACGAGACGAGCTACGAGAGTTGCAACGAGAAGGATTTCATTTTCAACATCACAAGGGGAGGCAGAGATGTGTTCAATCTAACACAAGCAAAGCCA
TACTACTTTCTAAGTGGGAGAGGCTTTTGCTATCAAGGAATGAAACTTGCTGTTTTTGTTGAAGAATCTCCTCCAAATAATAATTCACCACCAAATCTCCCCAAAATGTC
CAACCTCTCTCCATCTATATTACAACCACTATTTTCTCTCCCCCTCTTGCTATTCACCATTATTGCTAATTTTATTTCCTTCTTC
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGGATCGTCATGGCAGAGGCGGTGGCCGTGGCGGTGGCAATGGTGGCGCTCGGGTGGTTGTTGTGTGGAGTTGAGGGTAGAGATCCGGTGCTCCATAGGGTTGG
AGGAGGAAAATACACTTGGGCGCCTAATGTTAACTTCACTGATTGGTCGATTCACGAGCACTTCTACGTTGGTGATTGGCTTTATTTTGGGTTCGATAAGCATATCTACA
ACGTGTTGGAAGTGAACGAGACGAGCTACGAGAGTTGCAACGAGAAGGATTTCATTTTCAACATCACAAGGGGAGGCAGAGATGTGTTCAATCTAACACAAGCAAAGCCA
TACTACTTTCTAAGTGGGAGAGGCTTTTGCTATCAAGGAATGAAACTTGCTGTTTTTGTTGAAGAATCTCCTCCAAATAATAATTCACCACCAAATCTCCCCAAAATGTC
CAACCTCTCTCCATCTATATTACAACCACTATTTTCTCTCCCCCTCTTGCTATTCACCATTATTGCTAATTTTATTTCCTTCTTC
Protein sequenceShow/hide protein sequence
MFGIVMAEAVAVAVAMVALGWLLCGVEGRDPVLHRVGGGKYTWAPNVNFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKP
YYFLSGRGFCYQGMKLAVFVEESPPNNNSPPNLPKMSNLSPSILQPLFSLPLLLFTIIANFISFF