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MS023242 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023242
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA (Cytosine-5)-methyltransferase CMT3-like
Genome locationscaffold78:1293431..1293754
RNA-Seq ExpressionMS023242
SyntenyMS023242
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653489.1 hypothetical protein Csa_006929, partial [Cucumis sativus]5.8e-2075.34Show/hide
Query:  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVG
        S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G   G     +AVGFPWGVG
Subjt:  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVG

KAG6588160.1 hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3172.41Show/hide
Query:  MAAPTRSGG-SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGA-------QAAVGFPWGVGLLLLLILFPW
        MAA TRS   S+QWLLAT+ALI  GFLAYAIYDAA+AS +E+ QR+V+VSPLLLVV VHWLS+GGG GG G        Q AVGFPWGVG LLLL+LFPW
Subjt:  MAAPTRSGG-SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGA-------QAAVGFPWGVGLLLLLILFPW

Query:  SAALLLLLLYFFFLTN
        SAA+LLL+LYFFFLTN
Subjt:  SAALLLLLLYFFFLTN

OMO73116.1 hypothetical protein CCACVL1_17460 [Corchorus capsularis]7.6e-1249.49Show/hide
Query:  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGG-------GSGGCGAQAAVGFPWGVGLLLLLILF
        PTRS       SEQWLL T +++  GFL Y +YDA +A+ AEL QR++++SPLLLVV VHWLS G        GS       A G PWGV  +LLL+ F
Subjt:  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGG-------GSGGCGAQAAVGFPWGVGLLLLLILF

XP_011660097.1 uncharacterized protein LOC105436341 [Cucumis sativus]1.2e-3077.78Show/hide
Query:  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN
        S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G   G     +AVGFPWGVG LLLL+LFPWS A+LLLLLYFFFLTN
Subjt:  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN

XP_022157357.1 uncharacterized protein LOC111024080 [Momordica charantia]4.7e-4698.15Show/hide
Query:  MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLL
        MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGS GCG QAAVGFPWGVGLLLLLILFPWSAALLLLL
Subjt:  MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLL

Query:  LYFFFLTN
        LYFFFLTN
Subjt:  LYFFFLTN

TrEMBL top hitse value%identityAlignment
A0A0A0M2K2 Uncharacterized protein6.0e-3177.78Show/hide
Query:  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN
        S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G   G     +AVGFPWGVG LLLL+LFPWS A+LLLLLYFFFLTN
Subjt:  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN

A0A1R3HRX6 Uncharacterized protein3.7e-1249.49Show/hide
Query:  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGG-------GSGGCGAQAAVGFPWGVGLLLLLILF
        PTRS       SEQWLL T +++  GFL Y +YDA +A+ AEL QR++++SPLLLVV VHWLS G        GS       A G PWGV  +LLL+ F
Subjt:  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGG-------GSGGCGAQAAVGFPWGVGLLLLLILF

A0A1R3K8K8 Uncharacterized protein3.7e-1249.49Show/hide
Query:  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGG-------GSGGCGAQAAVGFPWGVGLLLLLILF
        PTRS       SEQWLL T +++  GFL Y +YDA +A+ AEL QR++++SPLLLVV VHWLS G        GS       A G PWGV  +LLL+ F
Subjt:  PTRS-----GGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGG-------GSGGCGAQAAVGFPWGVGLLLLLILF

A0A5A7TFN5 DNA (Cytosine-5)-methyltransferase CMT3-like6.0e-3177.78Show/hide
Query:  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN
        S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G   G     +AVGFPWGVG LLLL+LFPWS A+LLLLLYFFFLTN
Subjt:  SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN

A0A6J1DUA1 uncharacterized protein LOC1110240802.3e-4698.15Show/hide
Query:  MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLL
        MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGS GCG QAAVGFPWGVGLLLLLILFPWSAALLLLL
Subjt:  MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLL

Query:  LYFFFLTN
        LYFFFLTN
Subjt:  LYFFFLTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCACCCACCAGGTCAGGAGGCTCAGAGCAATGGCTTCTGGCCACTGTTGCCCTCATAACATTTGGGTTCTTGGCCTATGCCATTTACGACGCCGCCGTCGCCTC
GGTGGCCGAGTTGTTTCAGAGGATCGTCGTGGTTTCGCCACTGCTTTTGGTGGTTGCCGTTCACTGGCTGTCCATCGGCGGTGGCAGCGGCGGCTGTGGCGCTCAGGCGG
CTGTGGGGTTTCCTTGGGGAGTTGGTTTGCTTCTGCTTCTCATTCTGTTTCCTTGGAGTGCTGCTCTTCTTCTGCTTCTTCTTTACTTCTTTTTCCTCACTAAC
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCACCCACCAGGTCAGGAGGCTCAGAGCAATGGCTTCTGGCCACTGTTGCCCTCATAACATTTGGGTTCTTGGCCTATGCCATTTACGACGCCGCCGTCGCCTC
GGTGGCCGAGTTGTTTCAGAGGATCGTCGTGGTTTCGCCACTGCTTTTGGTGGTTGCCGTTCACTGGCTGTCCATCGGCGGTGGCAGCGGCGGCTGTGGCGCTCAGGCGG
CTGTGGGGTTTCCTTGGGGAGTTGGTTTGCTTCTGCTTCTCATTCTGTTTCCTTGGAGTGCTGCTCTTCTTCTGCTTCTTCTTTACTTCTTTTTCCTCACTAAC
Protein sequenceShow/hide protein sequence
MAAPTRSGGSEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSGGCGAQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLTN