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MS023266 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023266
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold78:1584485..1584649
RNA-Seq ExpressionMS023266
SyntenyMS023266
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4076327.1 unnamed protein product [Lactuca saligna]7.8e-0557.14Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFF
        + LTHLCF DDLMIFSHG+ A + FI + L  FA + GL PN  KS  F
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFF

GFB63275.1 RNA-directed DNA polymerase, eukaryota, reverse transcriptase zinc-binding domain protein [Tanacetum cinerariifolium]1.0e-0445.45Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN
        V LTHLCF+DDL++F +GD   +S + + LA F+ + GL+PN  KS+ F   +R+
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN

GFB81850.1 hypothetical protein [Tanacetum cinerariifolium]6.0e-0545.45Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN
        V LTHLCF DDL++F +GD  ++S + + LA F+ + GL+PN  KS+ F   +R+
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN

XP_022149381.1 uncharacterized protein LOC111017811 [Momordica charantia]3.3e-1176Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFG
        V+LTHLCF DDLMIFS  D   LSF+N+VLASF EL GLV NTRKSSFFG
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFG

XP_022157393.1 uncharacterized protein LOC111024102 [Momordica charantia]7.8e-0557.89Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAE--LRGLVPNTRKSSFFGARLRN
        V L HLCF DDLMIFSHGDL  LSFI DVL SF    + G      + S FGA L N
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAE--LRGLVPNTRKSSFFGARLRN

TrEMBL top hitse value%identityAlignment
A0A5A7TWG5 Reverse transcriptase domain-containing protein1.4e-0454.55Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN
        V LTHL F DDLMIF   D   + FI D L  F EL GL  N RKSS F A + N
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN

A0A699MLH5 Reverse transcriptase domain-containing protein2.9e-0545.45Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN
        V LTHLCF DDL++F +GD  ++S + + LA F+ + GL+PN  KS+ F   +R+
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN

A0A6J1D875 uncharacterized protein LOC1110178111.6e-1176Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFG
        V+LTHLCF DDLMIFS  D   LSF+N+VLASF EL GLV NTRKSSFFG
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFG

A0A6J1DT89 uncharacterized protein LOC1110241023.8e-0557.89Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAE--LRGLVPNTRKSSFFGARLRN
        V L HLCF DDLMIFSHGDL  LSFI DVL SF    + G      + S FGA L N
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAE--LRGLVPNTRKSSFFGARLRN

A0A6S7LZZ9 Reverse transcriptase domain-containing protein3.8e-0557.14Show/hide
Query:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFF
        + LTHLCF DDLMIFSHG+ A + FI + L  FA + GL PN  KS  F
Subjt:  VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTAGTCTAACTCATCTATGTTTTTTAGATGACCTGATGATTTTCTCGCATGGGGATCTCGCTTATTTATCCTTTATTAATGATGTTTTGGCCTCTTTTGCAGAGTTGAG
GGGTCTTGTTCCGAATACTCGGAAGAGCTCATTTTTTGGGGCAAGGCTTCGTAAT
mRNA sequenceShow/hide mRNA sequence
GTTAGTCTAACTCATCTATGTTTTTTAGATGACCTGATGATTTTCTCGCATGGGGATCTCGCTTATTTATCCTTTATTAATGATGTTTTGGCCTCTTTTGCAGAGTTGAG
GGGTCTTGTTCCGAATACTCGGAAGAGCTCATTTTTTGGGGCAAGGCTTCGTAAT
Protein sequenceShow/hide protein sequence
VSLTHLCFLDDLMIFSHGDLAYLSFINDVLASFAELRGLVPNTRKSSFFGARLRN