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MS023267 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023267
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold78:1586024..1586155
RNA-Seq ExpressionMS023267
SyntenyMS023267
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2284658.1 hypothetical protein Bca52824_055878 [Brassica carinata]1.0e-0763.64Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L P +  V WFSL+WF+  IPKH FIAWL  RD+LATRDRL  W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

KAG7584466.1 Endonuclease/exonuclease/phosphatase superfamily [Arabidopsis suecica]7.1e-0965.91Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L PT P VPWFS +WF+  IPKH F AWL VRD+L TRDRL  W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

XP_013616864.1 PREDICTED: uncharacterized protein LOC106323255 [Brassica oleracea var. oleracea]6.0e-0859.09Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L P  P V WFS +WF+GNIPKH FI W+  RD++ TRD+L RW
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

XP_022149381.1 uncharacterized protein LOC111017811 [Momordica charantia]5.3e-1279.55Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L+PTQPLVPWFS LWF GNI KH FIAWL VRD+LAT DRL RW
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]3.6e-1377.27Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L+P +P VPWFSL+WF GNIPKH FIAWL +RD+LATRDRLCRW
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

TrEMBL top hitse value%identityAlignment
A0A6D2JHK7 zf-RVT domain-containing protein1.1e-0754.55Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L P  P VPW+ L+W +  IPKH FI+W+++RD+L+TRDRL  W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

A0A6J1D875 uncharacterized protein LOC1110178112.5e-1279.55Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L+PTQPLVPWFS LWF GNI KH FIAWL VRD+LAT DRL RW
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

A0A6J1DTG0 uncharacterized protein LOC1110241651.8e-1377.27Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L+P +P VPWFSL+WF GNIPKH FIAWL +RD+LATRDRLCRW
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

A0A6J1E271 uncharacterized protein LOC1110253246.5e-0861.36Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L+P +P V +F LLWF GNIPKH FI+WL +RD+L TR+RL +W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

R0GDG9 zf-RVT domain-containing protein (Fragment)8.5e-0859.52Show/hide
Query:  PTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        P  PLVPWF  +WF+  IPKH FI+W+V+R++L TRDRL  W
Subjt:  PTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.6e-0947.73Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L P   +VPW+  +WF+ ++PKH FI W+V  ++L TRDRL  W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.2e-0740.91Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        ++P  P + W   +WF+G +PKH F  W+   D+L TR RL  W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.4e-0950Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L P    V WF  +WF+G IPKH FIAW+ +R +L T+DR+  W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-0847.73Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L P    VPW   +WF+ ++PKH FI W+V  ++L TRDRL  W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-0847.73Show/hide
Query:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW
        L P    V W   +WF+G IPKH FI+W+ +R +L TRD+L  W
Subjt:  LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGCAGCCGACCCAACCTCTTGTTCCTTGGTTTTCTTTGCTTTGGTTCCGTGGGAACATTCCGAAGCATTATTTCATTGCTTGGTTGGTGGTGCGTGATCAGCTTGCTAC
GAGGGATCGCTTATGTCGTTGG
mRNA sequenceShow/hide mRNA sequence
TTGCAGCCGACCCAACCTCTTGTTCCTTGGTTTTCTTTGCTTTGGTTCCGTGGGAACATTCCGAAGCATTATTTCATTGCTTGGTTGGTGGTGCGTGATCAGCTTGCTAC
GAGGGATCGCTTATGTCGTTGG
Protein sequenceShow/hide protein sequence
LQPTQPLVPWFSLLWFRGNIPKHYFIAWLVVRDQLATRDRLCRW