; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS023271 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023271
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold78:1597004..1597552
RNA-Seq ExpressionMS023271
SyntenyMS023271
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035739.1 hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]7.0e-2638.42Show/hide
Query:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG
        FS  SL +HL    P+ K LFS + +S  P+++NIL WI++   + ++E LQ+K +  ++ PS+C LC   S+   HIF +CP +S  W  +F LFNL  
Subjt:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG

Query:  VLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYSSSIIYSHWEA
               +++ QL   S +LPK  + +W    KA + E+W ERNQRIFHDK + R+E           WCS    F NYS   I  +W A
Subjt:  VLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYSSSIIYSHWEA

RVW46830.1 putative ribonuclease H protein [Vitis vinifera]5.9e-1734.72Show/hide
Query:  SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNL
        SFSV S    L+K   PL       LW S  P KV  L+W++ +G +NT + LQ +     L P +C LC  N E+ DH+F HCP     W    +LFNL
Subjt:  SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNL

Query:  SGVLSVDTKSNIHQLFFCSF----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDLFPNYSSSIIYSHW
         GV+ V  +S I  +   SF    +  + ++LW  A    I  +W ERN RIF DK +             S W S ++ F     SI+  +W
Subjt:  SGVLSVDTKSNIHQLFFCSF----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDLFPNYSSSIIYSHW

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]1.3e-2738.86Show/hide
Query:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG
        FS  SL +HL    P+ K LFS + +S  P+++NIL WI++   +N++E LQ+K +  ++ PS+C LC   S+   HIF +CP +S  W  +F LFNL  
Subjt:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG

Query:  VLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYSSSIIYSHWEAFLS
               +++ QL   S +LPK  + +W    KA + E+W ERNQRIFHDK + R+E           WCS    F NYS   I  +W  FL+
Subjt:  VLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYSSSIIYSHWEAFLS

XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]2.4e-3441.57Show/hide
Query:  LPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFF
        +PK  F+ LWK+  P++VN+  WIL  G LNTA+ +Q+K  +  L PS C LC  + E  DH+FFHC FAS CW+ LF  FN+     +    N++QL  
Subjt:  LPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFF

Query:  CSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKK-----------DRSEWCSFSDLFPNYSSSIIYSHWEAFLS
            L  + + LW+N +KA +SELWFERN R+F +K++             S WCS  D F ++S S+IY++W AF++
Subjt:  CSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKK-----------DRSEWCSFSDLFPNYSSSIIYSHWEAFLS

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]5.5e-3945.83Show/hide
Query:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG
        ++V SL +HLT   PL K +FS +WK+  P++VNIL WI+L G LN AE LQ+K  T  L P+VC  C  +SE   H+FF CP++S CW+ L   FNL  
Subjt:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG

Query:  VLSVDTKSNIHQLFFCSFSLPKAQSLWVNAIKATISELWFERNQRIFHDK-----------KKDRSEWCSFSDLFPNYSSSIIYSHWEAFLS
         L  D KSN+ QL     S    + LW NA+KA +++LWFERNQRIF++K           ++  S WC  SD F  YS S    +WEAF+S
Subjt:  VLSVDTKSNIHQLFFCSFSLPKAQSLWVNAIKATISELWFERNQRIFHDK-----------KKDRSEWCSFSDLFPNYSSSIIYSHWEAFLS

TrEMBL top hitse value%identityAlignment
A0A438EGK2 Putative ribonuclease H protein2.9e-1734.72Show/hide
Query:  SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNL
        SFSV S    L+K   PL       LW S  P KV  L+W++ +G +NT + LQ +     L P +C LC  N E+ DH+F HCP     W    +LFNL
Subjt:  SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNL

Query:  SGVLSVDTKSNIHQLFFCSF----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDLFPNYSSSIIYSHW
         GV+ V  +S I  +   SF    +  + ++LW  A    I  +W ERN RIF DK +             S W S ++ F     SI+  +W
Subjt:  SGVLSVDTKSNIHQLFFCSF----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDLFPNYSSSIIYSHW

A0A5A7T2Y0 zf-RVT domain-containing protein3.4e-2638.42Show/hide
Query:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG
        FS  SL +HL    P+ K LFS + +S  P+++NIL WI++   + ++E LQ+K +  ++ PS+C LC   S+   HIF +CP +S  W  +F LFNL  
Subjt:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG

Query:  VLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYSSSIIYSHWEA
               +++ QL   S +LPK  + +W    KA + E+W ERNQRIFHDK + R+E           WCS    F NYS   I  +W A
Subjt:  VLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYSSSIIYSHWEA

A0A5D3DE60 zf-RVT domain-containing protein6.2e-2838.86Show/hide
Query:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG
        FS  SL +HL    P+ K LFS + +S  P+++NIL WI++   +N++E LQ+K +  ++ PS+C LC   S+   HIF +CP +S  W  +F LFNL  
Subjt:  FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSG

Query:  VLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYSSSIIYSHWEAFLS
               +++ QL   S +LPK  + +W    KA + E+W ERNQRIFHDK + R+E           WCS    F NYS   I  +W  FL+
Subjt:  VLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYSSSIIYSHWEAFLS

A0A6J1DIE2 uncharacterized protein LOC1110207651.2e-3441.57Show/hide
Query:  LPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFF
        +PK  F+ LWK+  P++VN+  WIL  G LNTA+ +Q+K  +  L PS C LC  + E  DH+FFHC FAS CW+ LF  FN+     +    N++QL  
Subjt:  LPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFF

Query:  CSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKK-----------DRSEWCSFSDLFPNYSSSIIYSHWEAFLS
            L  + + LW+N +KA +SELWFERN R+F +K++             S WCS  D F ++S S+IY++W AF++
Subjt:  CSFSLPKA-QSLWVNAIKATISELWFERNQRIFHDKKK-----------DRSEWCSFSDLFPNYSSSIIYSHWEAFLS

A5BY18 Reverse transcriptase domain-containing protein2.9e-1735.23Show/hide
Query:  SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNL
        SFSV S    L+K   PL       LW S  P KV  L+W++ +G +NT + LQ +     L P  C LC  N E+ DH+F HCP     W    +LFNL
Subjt:  SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNL

Query:  SGVLSVDTKSNIHQLFFCSF----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDLFPNYSSSIIYSHW
         GV+ V  +S I  +   SF    +L + + LW  A    I  +W ERN RIF DK +             S W S ++ F     SI+  +W
Subjt:  SGVLSVDTKSNIHQLFFCSF----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDLFPNYSSSIIYSHW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G45063.1 copper ion binding;electron carriers6.1e-0451.72Show/hide
Query:  PSVCFLCYSNSETQDHIFFHCPFASSCWS
        PS+C LC +  ET+ H+FF CPF+   WS
Subjt:  PSVCFLCYSNSETQDHIFFHCPFASSCWS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTTTTTCAGTAAACTCTTTACACTCTCATCTTACAAAAGGGATCCCTCTTCCAAAAGCTTTATTCTCGGGTCTGTGGAAATCTTCTTGCCCAAAAAAGGTTAATATTCT
TTCTTGGATTCTCCTAAATGGGCATTTGAATACAGCAGAAACTTTGCAAAGAAAGATGGCCACCTTCCATTTACAGCCTTCGGTCTGTTTCCTTTGTTATTCTAACAGTG
AGACACAAGATCATATCTTCTTCCATTGTCCTTTTGCATCAAGCTGCTGGTCATCTCTTTTCCAGCTGTTTAATTTGTCTGGGGTCTTATCGGTTGACACCAAAAGCAAC
ATTCATCAGCTATTCTTTTGTTCTTTCTCCCTCCCGAAGGCCCAATCTCTTTGGGTTAATGCTATCAAAGCCACTATTTCGGAGTTATGGTTTGAAAGGAACCAACGTAT
TTTCCATGACAAGAAGAAAGATCGCTCCGAATGGTGTTCCTTCTCGGATTTGTTCCCAAACTATTCTTCATCCATTATTTACAGCCATTGGGAAGCTTTTCTTTCTCTT
mRNA sequenceShow/hide mRNA sequence
AGTTTTTCAGTAAACTCTTTACACTCTCATCTTACAAAAGGGATCCCTCTTCCAAAAGCTTTATTCTCGGGTCTGTGGAAATCTTCTTGCCCAAAAAAGGTTAATATTCT
TTCTTGGATTCTCCTAAATGGGCATTTGAATACAGCAGAAACTTTGCAAAGAAAGATGGCCACCTTCCATTTACAGCCTTCGGTCTGTTTCCTTTGTTATTCTAACAGTG
AGACACAAGATCATATCTTCTTCCATTGTCCTTTTGCATCAAGCTGCTGGTCATCTCTTTTCCAGCTGTTTAATTTGTCTGGGGTCTTATCGGTTGACACCAAAAGCAAC
ATTCATCAGCTATTCTTTTGTTCTTTCTCCCTCCCGAAGGCCCAATCTCTTTGGGTTAATGCTATCAAAGCCACTATTTCGGAGTTATGGTTTGAAAGGAACCAACGTAT
TTTCCATGACAAGAAGAAAGATCGCTCCGAATGGTGTTCCTTCTCGGATTTGTTCCCAAACTATTCTTCATCCATTATTTACAGCCATTGGGAAGCTTTTCTTTCTCTT
Protein sequenceShow/hide protein sequence
SFSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSN
IHQLFFCSFSLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDRSEWCSFSDLFPNYSSSIIYSHWEAFLSL