CuGenDBv2

Gene ID	MS023283
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold101:293032..293391
RNA-Seq Expression	MS023283
Synteny	MS023283
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

CAA7056903.1 unnamed protein product [Microthlaspi erraticum]

1.9e-35

54.17

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        + A FWW +   ++K+HW+SWE LCL K LGG+ FRD+  FN+ALLAKQAW+FL +PN L +R+L++ YFP +SFL A    R SY W+S++WGR+LL  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        GIRK+VGNG T++ + D W+
Subjt:  GIRKQVGNGETINAFKDSWL

XP_013668513.1 uncharacterized protein LOC106372778 [Brassica napus]

6.6e-33

54.17

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        +   FWWGS    +K+HW+SW+ LCL KE GG+ FRDLE FN+ALLAKQAW+ L  PN L + +L++ YFP T FLEA    R S+ W+SL++GRDLL  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        G+RK+VG+G +I  + D WL
Subjt:  GIRKQVGNGETINAFKDSWL

XP_019092295.1 PREDICTED: uncharacterized protein LOC109129116 [Camelina sativa]

2.3e-33

52.5

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        + A FWW ST   K +HW+SWE LCL K+ GGL FR+++ FN+ALLAKQAWR L  PN L +R++++ YFP + FLEA+  PR SY W+S+++GRDLL  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        G++K VGNG++   + D+W+
Subjt:  GIRKQVGNGETINAFKDSWL

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]

7.8e-42

66.67

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        +FARFWWGS+ D KKLHWMSWE +CL KELGGLNFRDLEGFN+AL+AKQ WR L NPN+L SRVL+A YF  +  L+A+     SYFWK  IWGRDLL  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        G+R +VGNG TIN F D W+
Subjt:  GIRKQVGNGETINAFKDSWL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]

1.6e-34

62.39

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Query:  DQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIRKQVGNGET
        + +KLHWM W  +C  KE GGLNFRDLEGFN+AL+AK  WRFL +PNLL S+VL+  YF  TS L+AS++ +SSYFWK  +WGRDLL  G+R +VGNG T
Subjt:  DQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIRKQVGNGET

Query:  INAFKDSWL
        I AF D WL
Subjt:  INAFKDSWL

TrEMBL top hits

e value

%identity

Alignment

A0A1J3G0X8 Putative mitochondrial protein

1.2e-35

56.67

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        + A FWW S  ++KK+HW+SWE +CL K LGG+ FRD+E FN+ALLAKQAWR L +   LA+RVL++ YFP T FLEA    R S+ WKS+IWGR+LL  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        G+RK+VGNG ++N + D W+
Subjt:  GIRKQVGNGETINAFKDSWL

A0A1J3IFW5 Putative mitochondrial protein (Fragment)

1.4e-33

53.33

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        + A FWW S  +++K+HW+SWE +CL K LGG+ FRD+E FN+ALLAKQAWR L  P  L +R+LR+ YFP +SF+ +    R S+ W S++WGRDLL  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        G+RK+VGNG++IN + D W+
Subjt:  GIRKQVGNGETINAFKDSWL

A0A6D2KWQ7 Reverse transcriptase domain-containing protein

9.0e-36

54.17

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        + A FWW +   ++K+HW+SWE LCL K LGG+ FRD+  FN+ALLAKQAW+FL +PN L +R+L++ YFP +SFL A    R SY W+S++WGR+LL  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        GIRK+VGNG T++ + D W+
Subjt:  GIRKQVGNGETINAFKDSWL

A0A6J1BRN0 uncharacterized protein LOC111004787

3.8e-42

66.67

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        +FARFWWGS+ D KKLHWMSWE +CL KELGGLNFRDLEGFN+AL+AKQ WR L NPN+L SRVL+A YF  +  L+A+     SYFWK  IWGRDLL  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        G+R +VGNG TIN F D W+
Subjt:  GIRKQVGNGETINAFKDSWL

A0A6J1DX30 uncharacterized protein LOC111024874

7.6e-35

62.39

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Query:  DQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIRKQVGNGET
        + +KLHWM W  +C  KE GGLNFRDLEGFN+AL+AK  WRFL +PNLL S+VL+  YF  TS L+AS++ +SSYFWK  +WGRDLL  G+R +VGNG T
Subjt:  DQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIRKQVGNGET

Query:  INAFKDSWL
        I AF D WL
Subjt:  INAFKDSWL

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.1e-13

35.29

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Query:  FWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSY--FWKSLIWG-RDLLSHG
        F WGST ++KK H + W  +C  K+ GGL  R  +  N+AL++K  WR L   N L + VL+  Y            P+ S+   W+S+  G RD++SHG
Subjt:  FWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSY--FWKSLIWG-RDLLSHG

Query:  IRKQVGNGETINAFKDSWL
        +    G+G+ I  + D W+
Subjt:  IRKQVGNGETINAFKDSWL

P93295 Uncharacterized mitochondrial protein AtMg00310

3.9e-28

47.86

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Query:  FWWGSTIDQKKLHWMSWEHLCLLKE-LGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIR
        FWW S  +++K+ W++W+ LC  KE  GGL FRDL  FN+ALLAKQ++R +H P+ L SR+LR+ YFP++S +E S   R SY W+S+I GR+LLS G+ 
Subjt:  FWWGSTIDQKKLHWMSWEHLCLLKE-LGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIR

Query:  KQVGNGETINAFKDSWL
        + +G+G     + D W+
Subjt:  KQVGNGETINAFKDSWL

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

9.2e-25

40.83

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Query:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH
        + A FWW +  + K +HW +W+HL   K  GG+ F+D+E FN ALL KQ WR L  P  L ++V ++ YF  +  L A    R S+ WKS+   +++L  
Subjt:  IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSH

Query:  GIRKQVGNGETINAFKDSWL
        G R  VGNGE I  ++  WL
Subjt:  GIRKQVGNGETINAFKDSWL

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.8e-29

47.86

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Query:  FWWGSTIDQKKLHWMSWEHLCLLKE-LGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIR
        FWW S  +++K+ W++W+ LC  KE  GGL FRDL  FN+ALLAKQ++R +H P+ L SR+LR+ YFP++S +E S   R SY W+S+I GR+LLS G+ 
Subjt:  FWWGSTIDQKKLHWMSWEHLCLLKE-LGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIR

Query:  KQVGNGETINAFKDSWL
        + +G+G     + D W+
Subjt:  KQVGNGETINAFKDSWL

Sequences

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CDS sequence

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ATTTTTGCTCGTTTTTGGTGGGGTTCTACTATTGATCAGAAAAAGTTGCACTGGATGAGTTGGGAGCATTTATGTCTCCTGAAAGAGCTTGGTGGTCTGAACTTTAGGGA
TCTTGAAGGTTTCAACAAGGCCCTTCTTGCTAAGCAAGCTTGGCGTTTCCTTCATAATCCTAATCTATTGGCTTCGAGAGTCTTGAGAGCGATATACTTTCCATATACCT
CTTTTCTTGAGGCCTCCTCTCATCCTCGCTCTTCTTATTTTTGGAAGAGCCTTATTTGGGGTCGTGATCTTCTTTCTCATGGAATCAGAAAGCAAGTTGGTAATGGAGAG
ACCATAAATGCCTTTAAAGACTCATGGCTC

mRNA sequence

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Protein sequence

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IFARFWWGSTIDQKKLHWMSWEHLCLLKELGGLNFRDLEGFNKALLAKQAWRFLHNPNLLASRVLRAIYFPYTSFLEASSHPRSSYFWKSLIWGRDLLSHGIRKQVGNGE
TINAFKDSWL

MS023283 (gene) of Bitter gourd (TR) v1 genome