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MS023285 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023285
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold101:294514..294807
RNA-Seq ExpressionMS023285
SyntenyMS023285
Gene Ontology termsGO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EMS54402.1 Ketohexokinase [Triticum urartu]1.5e-0636.84Show/hide
Query:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
        +EL AIR G+  A  IGC+ + +ESD   ++  +N   D L PE  ++ +      +F   SF +  REANQ AD LAK+     SS  W    P
Subjt:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
KAE8698283.1 EPIDERMAL PATTERNING FACTOR-like protein 5 [Hibiscus syriacus]3.2e-0938.04Show/hide
Query:  ELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKS
        E +A  EGL+ A+S+GC R+ +E DSC+ IC  +  +   S   ++L  I + S+ F++CSF ++ R  N  AD +A+ GL   SS+ W  S
Subjt:  ELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKS
KAF8391778.1 hypothetical protein HHK36_022012 [Tetracentron sinense]3.0e-0736.08Show/hide
Query:  ISELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFPP
        + E +A REGL FA+ +G   + +ESDS  +I  +    +  S E +VL D+ +   +F  CSF +V RE N  A  LA+  L +   I W +  PP
Subjt:  ISELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFPP
VAH20608.1 unnamed protein product [Triticum turgidum subsp. durum]1.5e-0636.84Show/hide
Query:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
        +E++AIR GLI A++IGC+ L +ESDS  ++ +IN + D L  E  +  +      +F     ++  REAN  AD +AK+ L   SS+ W +  P
Subjt:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
VAH65567.1 unnamed protein product [Triticum turgidum subsp. durum]2.5e-0636.84Show/hide
Query:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
        +EL AIR G+  A  IGC+ + +ESD   ++  +N   D L PE  ++ +      +F   SF +  REANQ AD LAK+     SS  W    P
Subjt:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
TrEMBL top hitse value%identityAlignment
A0A446K5I3 RNase H domain-containing protein7.2e-0736.84Show/hide
Query:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
        +E++AIR GLI A++IGC+ L +ESDS  ++ +IN + D L  E  +  +      +F     ++  REAN  AD +AK+ L   SS+ W +  P
Subjt:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
A0A446NU09 RNase H domain-containing protein1.2e-0636.84Show/hide
Query:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
        +EL AIR G+  A  IGC+ + +ESD   ++  +N   D L PE  ++ +      +F   SF +  REANQ AD LAK+     SS  W    P
Subjt:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
A0A6A3A2L6 EPIDERMAL PATTERNING FACTOR-like protein 51.5e-0938.04Show/hide
Query:  ELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKS
        E +A  EGL+ A+S+GC R+ +E DSC+ IC  +  +   S   ++L  I + S+ F++CSF ++ R  N  AD +A+ GL   SS+ W  S
Subjt:  ELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKS
A0A6P6WWZ3 uncharacterized protein LOC1137369222.1e-0636.26Show/hide
Query:  AIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
        AIR+GL+ A  +G  R+ M+ D   +I  I+   +  +P   ++ DI   S  F+ CSF +V R+ N+ A  LA+    + S+I WK+SFP
Subjt:  AIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
M7Z366 Ketohexokinase7.2e-0736.84Show/hide
Query:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
        +EL AIR G+  A  IGC+ + +ESD   ++  +N   D L PE  ++ +      +F   SF +  REANQ AD LAK+     SS  W    P
Subjt:  SELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0437.93Show/hide
Query:  LISELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERV---VLHDIISASRNFEVCSFMYVLREANQAADLLAKHGL
        L++E +A+   L +A SIG ++LSM SDS   I  I  +    SP      ++ DI++ S  F   SF +V R  N+ AD LAK  L
Subjt:  LISELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERV---VLHDIISASRNFEVCSFMYVLREANQAADLLAKHGL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTATCTCAGAACTCATGGCTATTAGAGAAGGTCTTATCTTTGCGATCTCAATTGGTTGTTCCAGGCTCTCAATGGAATCAGATTCTTGCACCTCTATCTGTTTGATAAA
TGGAGACCTGGATACTCTTAGCCCTGAGAGAGTGGTCCTTCATGATATTATCTCGGCTTCTCGCAATTTTGAAGTCTGTTCCTTCATGTATGTTTTACGGGAGGCGAATC
AGGCGGCAGATCTTCTTGCCAAGCATGGTCTTCACGTCTGTAGCTCCATTGAATGGAAGAAAAGCTTTCCCCCT
mRNA sequenceShow/hide mRNA sequence
CTTATCTCAGAACTCATGGCTATTAGAGAAGGTCTTATCTTTGCGATCTCAATTGGTTGTTCCAGGCTCTCAATGGAATCAGATTCTTGCACCTCTATCTGTTTGATAAA
TGGAGACCTGGATACTCTTAGCCCTGAGAGAGTGGTCCTTCATGATATTATCTCGGCTTCTCGCAATTTTGAAGTCTGTTCCTTCATGTATGTTTTACGGGAGGCGAATC
AGGCGGCAGATCTTCTTGCCAAGCATGGTCTTCACGTCTGTAGCTCCATTGAATGGAAGAAAAGCTTTCCCCCT
Protein sequenceShow/hide protein sequence
LISELMAIREGLIFAISIGCSRLSMESDSCTSICLINGDLDTLSPERVVLHDIISASRNFEVCSFMYVLREANQAADLLAKHGLHVCSSIEWKKSFPP