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MS023286 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023286
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description9-cis-epoxycarotenoid dioxygenase
Genome locationscaffold101:299049..299225
RNA-Seq ExpressionMS023286
SyntenyMS023286
Gene Ontology termsGO:0051213 - dioxygenase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
APO14274.1 9-cis-epoxycarotenoid dioxygenase NCED2 [Luffa aegyptiaca]3.9e-1055.22Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L +TGTIP+CIN +YL NGANPLFE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

KAG6581433.1 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.9e-1056.72Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L VTGTIP+CIN +YL NGANPLFE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

TYK13289.1 9-cis-epoxycarotenoid dioxygenase NCED3 [Cucumis melo var. makuwa]5.0e-1055.22Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L VTGTIP+CIN +YL NGANPLF+ T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

XP_022926148.1 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Cucurbita moschata]3.9e-1056.72Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L VTGTIP+CIN +YL NGANPLFE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

XP_023543156.1 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Cucurbita pepo subsp. pepo]3.9e-1056.72Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L VTGTIP+CIN +YL NGANPLFE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

TrEMBL top hitse value%identityAlignment
A0A1L5JHV5 9-cis-epoxycarotenoid dioxygenase NCED21.9e-1055.22Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L +TGTIP+CIN +YL NGANPLFE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

A0A2Z4GT57 9-cis-epoxycarotenoid dioxygenase1.9e-1056.72Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L VTGTIP+CIN +YL NGANPLFE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

A0A5A7UDK3 9-cis-epoxycarotenoid dioxygenase NCED32.4e-1055.22Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L VTGTIP+CIN +YL NGANPLF+ T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

A0A5D3CSV9 9-cis-epoxycarotenoid dioxygenase NCED32.4e-1055.22Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L VTGTIP+CIN +YL NGANPLF+ T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

A0A6J1EH85 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like1.9e-1056.72Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S EL HPLPK      +         EQPV H+L VTGTIP+CIN +YL NGANPLFE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

SwissProt top hitse value%identityAlignment
K4CJJ1 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic6.2e-1150.75Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S+EL +PLPK      +         EQ V H+L VTGTIP+CIN +Y+ NGANPLFE    HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

O24023 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic2.2e-0846.88Show/hide
Query:  ELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        EL HPLPK      +         E PV   L VTG IP C+  +Y+ NGANPLFE T  HH F
Subjt:  ELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

O49505 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic1.1e-0744.78Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        IS E   PLPK      +         E  V  +L V GTIP+CI+ +Y+ NGANP+FE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

Q9C6Z1 Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic1.4e-0746.27Show/hide
Query:  ISKELPHPLPKL--PTHEFKS------EQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        + +E   PLPK   P H+         EQ V   L V G IP+CI+ +YL NGANPLFE    HHLF
Subjt:  ISKELPHPLPKL--PTHEFKS------EQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

Q9M9F5 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic1.1e-0745Show/hide
Query:  PHPLPKLPTHEFKS------EQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        PHP    P  +         E+PV+H+L VTGT+P CI  +Y+ NGANPL +    HHLF
Subjt:  PHPLPKLPTHEFKS------EQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

Arabidopsis top hitse value%identityAlignment
AT1G30100.1 nine-cis-epoxycarotenoid dioxygenase 51.0e-0846.27Show/hide
Query:  ISKELPHPLPKL--PTHEFKS------EQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        + +E   PLPK   P H+         EQ V   L V G IP+CI+ +YL NGANPLFE    HHLF
Subjt:  ISKELPHPLPKL--PTHEFKS------EQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

AT1G78390.1 nine-cis-epoxycarotenoid dioxygenase 97.8e-0945Show/hide
Query:  PHPLPKLPTHEFKS------EQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        PHP    P  +         E+PV+H+L VTGT+P CI  +Y+ NGANPL +    HHLF
Subjt:  PHPLPKLPTHEFKS------EQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

AT3G14440.1 nine-cis-epoxycarotenoid dioxygenase 33.3e-0740.3Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +S E  HPLPK      +        +EQPV  +L V G +P+ I  +Y+ NGANPL E    HH F
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

AT3G24220.1 nine-cis-epoxycarotenoid dioxygenase 62.1e-0648.78Show/hide
Query:  SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        +E PV + L V G IP+C+  +Y+ NGANP+F     HHLF
Subjt:  SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF

AT4G18350.1 nine-cis-epoxycarotenoid dioxygenase 27.8e-0944.78Show/hide
Query:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF
        IS E   PLPK      +         E  V  +L V GTIP+CI+ +Y+ NGANP+FE T  HHLF
Subjt:  ISKELPHPLPKLPTHEFK--------SEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTCCAAAGAACTCCCACACCCACTTCCGAAATTGCCAACCCATGAGTTCAAATCGGAGCAACCAGTCATGCACCACCTTCTGGTCACCGGAACCATCCCGAACTGCAT
TAACAGCATCTACCTCTGCAACGGGGCCAACCCGCTCTTTGAGGCCACCATCAGACACCACTTGTTT
mRNA sequenceShow/hide mRNA sequence
ATTTCCAAAGAACTCCCACACCCACTTCCGAAATTGCCAACCCATGAGTTCAAATCGGAGCAACCAGTCATGCACCACCTTCTGGTCACCGGAACCATCCCGAACTGCAT
TAACAGCATCTACCTCTGCAACGGGGCCAACCCGCTCTTTGAGGCCACCATCAGACACCACTTGTTT
Protein sequenceShow/hide protein sequence
ISKELPHPLPKLPTHEFKSEQPVMHHLLVTGTIPNCINSIYLCNGANPLFEATIRHHLF