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MS023287 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023287
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncyclin-dependent protein kinase inhibitor SMR6-like
Genome locationscaffold101:301979..302247
RNA-Seq ExpressionMS023287
SyntenyMS023287
Gene Ontology termsGO:0032875 - regulation of DNA endoreduplication (biological process)
GO:0045839 - negative regulation of mitotic nuclear division (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR040389 - Cyclin-dependent protein kinase inhibitor SMR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578666.1 Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. sororia]2.6e-1860Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG----------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQIDG  E +GKKW+I G  A++SLKPI TKSRAK  +DDG          KEARIPEKLSCP   RK +SL  SS  NH  +F N PDLE VFK+R
Subjt:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG----------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
KAG7016206.1 Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-1860Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG----------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQIDG  E +GKKW+I G  A++SLKPI TKSRAK  +DDG          KEARIPEKLSCP   RK +SL  SS  NH  +F N PDLE VFK+R
Subjt:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG----------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
XP_022993176.1 cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima]2.0e-1860Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDD----------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQIDG LE++GKKW+I G  A++SLKPI TKSRAK  +DD           KEARIPEKLSCP   RK +SL  SS  NH  +F N PDLE VFK+R
Subjt:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDD----------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
XP_023550994.1 cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo]9.0e-1961Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG----------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQIDG  E +GKKW+I G  A++SLKPI TKSRAK  DDDG          KEARIPEKLSCP   RK +SL  SS  NH  +F N PDLE VFK+R
Subjt:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG----------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
XP_038890813.1 cyclin-dependent protein kinase inhibitor SMR6 [Benincasa hispida]5.3e-1960.42Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQIDG  E++GKKW+I G   ++SLKPI TKS+AK  +DDG      KEARIPEKL CPP  RK +SL  SS  N++ +F N PDLE VFKLR
Subjt:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
TrEMBL top hitse value%identityAlignment
A0A0A0KUE2 Uncharacterized protein8.2e-1859.38Show/hide
Query:  SKKSQIDGDLESKGKKWLIVG-CAKASLKPIKTKSRAKHEDDD------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQID   E + KKW+I G  A++SLKPI TKS+ K  +DD      GKEARIPEKL CPP  RK +SL  SS  NH+ +F N PDLE VFKLR
Subjt:  SKKSQIDGDLESKGKKWLIVG-CAKASLKPIKTKSRAKHEDDD------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
A0A1S3C883 uncharacterized protein LOC1034981008.2e-1858.33Show/hide
Query:  SKKSQIDGDLESKGKKWLIVG-CAKASLKPIKTKSRAKHEDDD------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQID   E++ KKW+I G  A++SLKPI TKS+ K  ++D      GKEARIPEKL CPP  RK +SL  SS  NH+ +F N PDLE VFKLR
Subjt:  SKKSQIDGDLESKGKKWLIVG-CAKASLKPIKTKSRAKHEDDD------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
A0A5D3BY33 Uncharacterized protein8.2e-1858.33Show/hide
Query:  SKKSQIDGDLESKGKKWLIVG-CAKASLKPIKTKSRAKHEDDD------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQID   E++ KKW+I G  A++SLKPI TKS+ K  ++D      GKEARIPEKL CPP  RK +SL  SS  NH+ +F N PDLE VFKLR
Subjt:  SKKSQIDGDLESKGKKWLIVG-CAKASLKPIKTKSRAKHEDDD------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
A0A6J1FHD8 cyclin-dependent protein kinase inhibitor SMR62.4e-1758Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG----------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQIDG  E +GKKW+I G  A++SLKPI TK RAK  +DDG          KEARIPEKL CP   RK +SL  SS  NH  +F N PDLE VFK+R
Subjt:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDDG----------KEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
A0A6J1JVL3 cyclin-dependent protein kinase inhibitor SMR6-like9.7e-1960Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDD----------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
        SKKSQIDG LE++GKKW+I G  A++SLKPI TKSRAK  +DD           KEARIPEKLSCP   RK +SL  SS  NH  +F N PDLE VFK+R
Subjt:  SKKSQIDGDLESKGKKWLIVGC-AKASLKPIKTKSRAKHEDDD----------GKEARIPEKLSCPPTLRKHKSLNFSS--NHVWKFLNLPDLEFVFKLR
SwissProt top hitse value%identityAlignment
Q29Q81 Cyclin-dependent protein kinase inhibitor SMR68.5e-1246.3Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGCA-KASLKPIKTKSRAKHE-----DDD-------------GKEARIPEKLSCPPTLRKHK-SLNFSSNHVWKFLNLP-D
        SKKSQ +G LES GKKW+I G + +ASLKP+KTK RA  E     ++D              KE +IPE L CPP  RK + +L   SN V +F   P D
Subjt:  SKKSQIDGDLESKGKKWLIVGCA-KASLKPIKTKSRAKHE-----DDD-------------GKEARIPEKLSCPPTLRKHK-SLNFSSNHVWKFLNLP-D

Query:  LEFVFKLR
        LE VF  R
Subjt:  LEFVFKLR
Q9LVX6 Cyclin-dependent protein kinase inhibitor SMR78.5e-0435.42Show/hide
Query:  ISKKSQIDGDLESKGKKWLIVGCA-KASLKPIKTK-SRAKHEDDDG-------KEARIPEKLSCPPTLRKHKSLNFSSNH--VWKFLNLPDLEFVF
        ISKKSQ+  +L++ GKK++    + +ASLKP+KTK  + + E +DG       + A+ PE   CP   RK   +    N+  +  F+   D E VF
Subjt:  ISKKSQIDGDLESKGKKWLIVGCA-KASLKPIKTK-SRAKHEDDDG-------KEARIPEKLSCPPTLRKHKSLNFSSNH--VWKFLNLPDLEFVF
Arabidopsis top hitse value%identityAlignment
AT5G40460.1 unknown protein6.0e-1346.3Show/hide
Query:  SKKSQIDGDLESKGKKWLIVGCA-KASLKPIKTKSRAKHE-----DDD-------------GKEARIPEKLSCPPTLRKHK-SLNFSSNHVWKFLNLP-D
        SKKSQ +G LES GKKW+I G + +ASLKP+KTK RA  E     ++D              KE +IPE L CPP  RK + +L   SN V +F   P D
Subjt:  SKKSQIDGDLESKGKKWLIVGCA-KASLKPIKTKSRAKHE-----DDD-------------GKEARIPEKLSCPPTLRKHK-SLNFSSNHVWKFLNLP-D

Query:  LEFVFKLR
        LE VF  R
Subjt:  LEFVFKLR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATATCGAAAAAGTCCCAAATAGACGGCGACTTGGAATCGAAGGGGAAAAAATGGTTGATCGTCGGGTGCGCGAAAGCGTCGTTGAAGCCGATAAAGACGAAATCAAGGGC
AAAACATGAAGACGACGACGGCAAGGAAGCAAGAATACCGGAGAAACTGAGTTGCCCGCCAACGCTGAGGAAGCACAAATCTCTAAATTTCAGCTCTAATCATGTCTGGA
AGTTCTTAAATCTTCCCGATTTAGAATTTGTCTTCAAGCTTCGAAGT
mRNA sequenceShow/hide mRNA sequence
ATATCGAAAAAGTCCCAAATAGACGGCGACTTGGAATCGAAGGGGAAAAAATGGTTGATCGTCGGGTGCGCGAAAGCGTCGTTGAAGCCGATAAAGACGAAATCAAGGGC
AAAACATGAAGACGACGACGGCAAGGAAGCAAGAATACCGGAGAAACTGAGTTGCCCGCCAACGCTGAGGAAGCACAAATCTCTAAATTTCAGCTCTAATCATGTCTGGA
AGTTCTTAAATCTTCCCGATTTAGAATTTGTCTTCAAGCTTCGAAGT
Protein sequenceShow/hide protein sequence
ISKKSQIDGDLESKGKKWLIVGCAKASLKPIKTKSRAKHEDDDGKEARIPEKLSCPPTLRKHKSLNFSSNHVWKFLNLPDLEFVFKLRS