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MS023292 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023292
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-like zinc finger protein
Genome locationscaffold101:394912..395100
RNA-Seq ExpressionMS023292
SyntenyMS023292
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143488.1 zinc finger protein ZAT3-like [Momordica charantia]5.8e-0446.55Show/hide
Query:  SQKCTRCGKEFDSRQALGGHMRVHSEKPWR---------LGSHSISEPLPKWSVTGKR
        S KC  CGK F + +AL GHMR H ++ WR           S + S PLP WSVTG+R
Subjt:  SQKCTRCGKEFDSRQALGGHMRVHSEKPWR---------LGSHSISEPLPKWSVTGKR
TrEMBL top hitse value%identityAlignment
A0A1S3BLH2 LOW QUALITY PROTEIN: uncharacterized protein LOC1034911336.2e-0437.5Show/hide
Query:  KFIINSSCQPHPPSQKCTRCGKEFDSRQALGGHMRVHSEKPWR----------LGSHSISEPLPKWSVTGKR
        KF +    +      KC  C +EF+S +AL GHMR H ++ W+            S S S PLP WS+T KR
Subjt:  KFIINSSCQPHPPSQKCTRCGKEFDSRQALGGHMRVHSEKPWR----------LGSHSISEPLPKWSVTGKR
A0A6J1CQU4 zinc finger protein ZAT3-like2.8e-0446.55Show/hide
Query:  SQKCTRCGKEFDSRQALGGHMRVHSEKPWR---------LGSHSISEPLPKWSVTGKR
        S KC  CGK F + +AL GHMR H ++ WR           S + S PLP WSVTG+R
Subjt:  SQKCTRCGKEFDSRQALGGHMRVHSEKPWR---------LGSHSISEPLPKWSVTGKR
SwissProt top hitse value%identityAlignment
Q9LHS9 Probable transcriptional regulator RABBIT EARS1.6e-0451.16Show/hide
Query:  CQPHPPSQKCTRCGKEFDSRQALGGHMRVHSEKPWRLGSHSIS
        C   P S  C+ CG+EF S QALGGHM VH     RL   S+S
Subjt:  CQPHPPSQKCTRCGKEFDSRQALGGHMRVHSEKPWRLGSHSIS
Q9SIJ0 Zinc finger protein ZAT23.5e-0451.28Show/hide
Query:  QPHPPSQK----CTRCGKEFDSRQALGGHMRVHSEKPWR
        QP P + +    CT CGK+F S +AL GHMR H E+ WR
Subjt:  QPHPPSQK----CTRCGKEFDSRQALGGHMRVHSEKPWR
Arabidopsis top hitse value%identityAlignment
AT2G17180.1 C2H2-like zinc finger protein2.5e-0551.28Show/hide
Query:  QPHPPSQK----CTRCGKEFDSRQALGGHMRVHSEKPWR
        QP P + +    CT CGK+F S +AL GHMR H E+ WR
Subjt:  QPHPPSQK----CTRCGKEFDSRQALGGHMRVHSEKPWR
AT3G29340.1 zinc finger (C2H2 type) family protein1.1e-0544.9Show/hide
Query:  SQKCTRCGKEFDSRQALGGHMRVHSEKPWRLGSHSISEPLPKWSVTGKR
        S KC  CGK F+  QALGGH R+H     +L     SE  P+ S   KR
Subjt:  SQKCTRCGKEFDSRQALGGHMRVHSEKPWRLGSHSISEPLPKWSVTGKR
AT4G35280.1 C2H2-like zinc finger protein2.1e-0435.48Show/hide
Query:  PHPP--SQKCTRCGKEFDSRQALGGHMRVHSEKPWR-------------LGSHSISEPLPKW
        P+ P  ++ CT CG++F S +AL GHMR H E+ WR               S  +++ LP W
Subjt:  PHPP--SQKCTRCGKEFDSRQALGGHMRVHSEKPWR-------------LGSHSISEPLPKW
AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein1.1e-0551.16Show/hide
Query:  CQPHPPSQKCTRCGKEFDSRQALGGHMRVHSEKPWRLGSHSIS
        C   P S  C+ CG+EF S QALGGHM VH     RL   S+S
Subjt:  CQPHPPSQKCTRCGKEFDSRQALGGHMRVHSEKPWRLGSHSIS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAAAATTCATAATAAACTCAAGTTGCCAGCCCCATCCCCCGTCCCAAAAATGTACGAGGTGCGGGAAAGAGTTTGATTCTAGGCAGGCGTTGGGTGGGCACATGAGGGT
TCATTCTGAGAAGCCATGGAGATTAGGGTCACACTCCATCTCTGAGCCTCTGCCCAAGTGGTCTGTTACAGGCAAGAGA
mRNA sequenceShow/hide mRNA sequence
ACAAAATTCATAATAAACTCAAGTTGCCAGCCCCATCCCCCGTCCCAAAAATGTACGAGGTGCGGGAAAGAGTTTGATTCTAGGCAGGCGTTGGGTGGGCACATGAGGGT
TCATTCTGAGAAGCCATGGAGATTAGGGTCACACTCCATCTCTGAGCCTCTGCCCAAGTGGTCTGTTACAGGCAAGAGA
Protein sequenceShow/hide protein sequence
TKFIINSSCQPHPPSQKCTRCGKEFDSRQALGGHMRVHSEKPWRLGSHSISEPLPKWSVTGKR