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MS023293 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023293
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2
Genome locationscaffold101:403540..403656
RNA-Seq ExpressionMS023293
SyntenyMS023293
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AKU70820.1 hypothetical chloroplast RF21 [Panax notoginseng]4.4e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
ATJ26024.1 Ycf2 [Panax japonicus var. bipinnatifidus]4.4e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
ATJ26280.1 hypothetical protein RF2 [Panax vietnamensis]4.4e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
YP_009495765.1 Ycf2 [Panax trifolius]4.4e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
YP_010024686.1 hypothetical protein RF2 [Panax major]4.4e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
TrEMBL top hitse value%identityAlignment
A0A0R6IDM7 Protein Ycf22.1e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
A0A291NYQ7 Protein Ycf22.1e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
A0A5C0Q4A7 Protein Ycf22.1e-1089.74Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSPP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+S P
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSPP
A0A7M1I751 Protein Ycf22.1e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
W8CQB0 Protein Ycf22.1e-1092.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
SwissProt top hitse value%identityAlignment
A4QKE8 Protein Ycf21.1e-1189.19Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
        DPA PLFFLFKDQPFVSVFSHRE  ADEEMSKGLL+S
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
A4QKN5 Protein Ycf21.1e-1189.19Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
        DPA PLFFLFKDQPFVSVFSHRE  ADEEMSKGLL+S
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
B1A978 Protein Ycf21.1e-1189.19Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
        DPA PLFFLFKDQPFVSVFSHRE  ADEEMSKGLL+S
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
P56786 Protein Ycf21.1e-1189.19Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
        DPA PLFFLFKDQPFVSVFSHRE  ADEEMSKGLL+S
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
Q68RU4 Protein Ycf25.7e-1392.11Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
        DPA PLFFLFKDQPFVSVFSHREL ADEEMSKGLL+SP
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSP
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core7.7e-1389.19Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
        DPA PLFFLFKDQPFVSVFSHRE  ADEEMSKGLL+S
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core7.7e-1389.19Show/hide
Query:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS
        DPA PLFFLFKDQPFVSVFSHRE  ADEEMSKGLL+S
Subjt:  DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATCCTGCATATCCACTCTTTTTCCTATTCAAAGATCAACCTTTTGTCTCTGTGTTTTCACATCGAGAATTATGTGCAGATGAAGAGATGTCAAAGGGGCTGCTTAGTTC
CCCGCCA
mRNA sequenceShow/hide mRNA sequence
GATCCTGCATATCCACTCTTTTTCCTATTCAAAGATCAACCTTTTGTCTCTGTGTTTTCACATCGAGAATTATGTGCAGATGAAGAGATGTCAAAGGGGCTGCTTAGTTC
CCCGCCA
Protein sequenceShow/hide protein sequence
DPAYPLFFLFKDQPFVSVFSHRELCADEEMSKGLLSSPP