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MS023294 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023294
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc finger family protein
Genome locationscaffold101:406158..406352
RNA-Seq ExpressionMS023294
SyntenyMS023294
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044653 - C2H2-type zinc-finger protein AZF1/2/3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3666527.1 hypothetical protein FXO37_10506 [Capsicum annuum]5.9e-1257.38Show/hide
Query:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK
        P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGRK
Subjt:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK

PHT44057.1 hypothetical protein CQW23_18082 [Capsicum baccatum]3.5e-1261.4Show/hide
Query:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV----TTTAPAWSLTAPRGRK
        P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +    T T P WS+TA RGRK
Subjt:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV----TTTAPAWSLTAPRGRK

PHT77464.1 hypothetical protein T459_20986 [Capsicum annuum]5.9e-1257.38Show/hide
Query:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK
        P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGRK
Subjt:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK

PHU12866.1 hypothetical protein BC332_19796 [Capsicum chinense]5.9e-1257.38Show/hide
Query:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK
        P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGRK
Subjt:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK

XP_022143487.1 uncharacterized protein LOC111013363 [Momordica charantia]1.2e-3198.46Show/hide
Query:  IKLSGGVHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTAPRGRK
        IKLSGG+HKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTAPRGRK
Subjt:  IKLSGGVHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTAPRGRK

TrEMBL top hitse value%identityAlignment
A0A1U8HEI9 zinc finger protein ZAT22.9e-1257.38Show/hide
Query:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK
        P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGRK
Subjt:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK

A0A2G2WFN4 Uncharacterized protein1.7e-1261.4Show/hide
Query:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV----TTTAPAWSLTAPRGRK
        P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +    T T P WS+TA RGRK
Subjt:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV----TTTAPAWSLTAPRGRK

A0A2G2Z677 Uncharacterized protein2.9e-1257.38Show/hide
Query:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK
        P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGRK
Subjt:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK

A0A2G3C2B5 Uncharacterized protein2.9e-1257.38Show/hide
Query:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK
        P C ICGK F SMK L+GHMR HP+R+WRGI+PP  +        T T P WS+TA RGRK
Subjt:  PKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTV--------TTTAPAWSLTAPRGRK

A0A6J1CQY7 uncharacterized protein LOC1110133635.6e-3298.46Show/hide
Query:  IKLSGGVHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTAPRGRK
        IKLSGG+HKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTAPRGRK
Subjt:  IKLSGGVHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTAPRGRK

SwissProt top hitse value%identityAlignment
O65499 Zinc finger protein ZAT36.0e-0762.5Show/hide
Query:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP
        C  CG++F S K L+GHMR HP+R WRGI PP
Subjt:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP

Q9SIJ0 Zinc finger protein ZAT29.2e-0863.64Show/hide
Query:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPN
        C  CGK+F S+K L+GHMR HP+R WRGI PP+
Subjt:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPN

Arabidopsis top hitse value%identityAlignment
AT2G17180.1 C2H2-like zinc finger protein6.6e-0963.64Show/hide
Query:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPN
        C  CGK+F S+K L+GHMR HP+R WRGI PP+
Subjt:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPN

AT2G26940.1 C2H2-type zinc finger family protein2.9e-0963.64Show/hide
Query:  KCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP
        +C +CGKEF +M  L+GHMR HPDR+W+GI PP
Subjt:  KCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP

AT4G35280.1 C2H2-like zinc finger protein4.2e-0862.5Show/hide
Query:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP
        C  CG++F S K L+GHMR HP+R WRGI PP
Subjt:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP

AT4G35610.1 zinc finger (C2H2 type) family protein1.0e-0647.73Show/hide
Query:  KKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTA
        K  P C ICG+ F S K ++GHMR H DR+++G  PP T +  A
Subjt:  KKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTA

AT5G56200.1 C2H2 type zinc finger transcription factor family8.6e-0965.62Show/hide
Query:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP
        C +C K+F SMK LYGHMR HPDR W+G+ PP
Subjt:  CGICGKEFCSMKGLYGHMRTHPDRSWRGIEPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAAACTCAGCGGCGGCGTTCATAAGAAGAAGCAGCCTAAATGTGGAATCTGTGGGAAGGAGTTTTGTTCCATGAAGGGTTTGTATGGTCACATGAGGACTCATCCAGA
CCGATCCTGGAGAGGGATTGAACCTCCGAATACTGTAACGACAACAGCTCCGGCCTGGTCTCTCACCGCCCCGAGAGGGCGGAAG
mRNA sequenceShow/hide mRNA sequence
ATTAAACTCAGCGGCGGCGTTCATAAGAAGAAGCAGCCTAAATGTGGAATCTGTGGGAAGGAGTTTTGTTCCATGAAGGGTTTGTATGGTCACATGAGGACTCATCCAGA
CCGATCCTGGAGAGGGATTGAACCTCCGAATACTGTAACGACAACAGCTCCGGCCTGGTCTCTCACCGCCCCGAGAGGGCGGAAG
Protein sequenceShow/hide protein sequence
IKLSGGVHKKKQPKCGICGKEFCSMKGLYGHMRTHPDRSWRGIEPPNTVTTTAPAWSLTAPRGRK