; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS023305 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023305
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBEST Arabidopsis thaliana protein match is: embryo defective 1303 .
Genome locationscaffold101:553760..555359
RNA-Seq ExpressionMS023305
SyntenyMS023305
Gene Ontology termsGO:0009658 - chloroplast organization (biological process)
GO:0010027 - thylakoid membrane organization (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR040299 - Protein FERTILITY RESTORER RF2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596785.1 Protein YELLOW LEAF 1, choloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.9e-6386.58Show/hide
Query:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
        KA NFHL RDSFQ++  NGR Q V+AK GPL++KPI S G R  VLYSSRK NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
Subjt:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP

Query:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE PYQNDRRR
Subjt:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

XP_022143520.1 uncharacterized protein LOC111013392 [Momordica charantia]1.8e-7599.33Show/hide
Query:  TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF
        TKAKNFHL RDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF
Subjt:  TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF

Query:  PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
Subjt:  PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

XP_022949842.1 uncharacterized protein LOC111453117 [Cucurbita moschata]3.8e-6285.91Show/hide
Query:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
        KA NFHL  DSFQ++  NGR Q V+AK GPL++KPI S G R  VLYSSRK NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
Subjt:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP

Query:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE PYQNDRRR
Subjt:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

XP_023005574.1 uncharacterized protein LOC111498519 isoform X1 [Cucurbita maxima]7.7e-6386.58Show/hide
Query:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
        KA NFHL RDSFQ++  NGR Q V+AK GPL++KPI S GT   VLYSSRK NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
Subjt:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP

Query:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE PYQNDRRR
Subjt:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

XP_023540533.1 uncharacterized protein LOC111800870 [Cucurbita pepo subsp. pepo]5.3e-6487.25Show/hide
Query:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
        +A NFHL RDSFQ+Q  NGR Q V+AK GPL++KPI S GTR  VLYSSRK NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
Subjt:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP

Query:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE PYQNDRRR
Subjt:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

TrEMBL top hitse value%identityAlignment
A0A6J1CP11 uncharacterized protein LOC1110133928.5e-7699.33Show/hide
Query:  TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF
        TKAKNFHL RDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF
Subjt:  TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF

Query:  PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
Subjt:  PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

A0A6J1F258 uncharacterized protein LOC1114387819.1e-6285.33Show/hide
Query:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRK-TNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF
        K K+F LRRDS QLQ  NGR Q V+AK GP+FLKPIPS GT+  VLYS+RK  NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF
Subjt:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRK-TNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF

Query:  PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEG Y++DRRR
Subjt:  PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

A0A6J1GD79 uncharacterized protein LOC1114531171.8e-6285.91Show/hide
Query:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
        KA NFHL  DSFQ++  NGR Q V+AK GPL++KPI S G R  VLYSSRK NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
Subjt:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP

Query:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE PYQNDRRR
Subjt:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

A0A6J1HQC3 uncharacterized protein LOC1114651273.5e-6184.67Show/hide
Query:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRK-TNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF
        K K+F LRRDS QLQ  NGR Q V+AK GP+FLKPIPS GT+   LYS+RK  NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF
Subjt:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRK-TNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGF

Query:  PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEG Y++DRRR
Subjt:  PPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

A0A6J1KZM4 uncharacterized protein LOC111498519 isoform X13.7e-6386.58Show/hide
Query:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
        KA NFHL RDSFQ++  NGR Q V+AK GPL++KPI S GT   VLYSSRK NAF CFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP
Subjt:  KAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFP

Query:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE PYQNDRRR
Subjt:  PRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

SwissProt top hitse value%identityAlignment
F1SZ41 Protein FERTILITY RESTORER RF2, mitochondrial9.6e-0849.4Show/hide
Query:  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE
        + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG  N+ GGF  F  +  L +LK+ E
Subjt:  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE

F1SZ42 Protein FERTILITY RESTORER RF2, mitochondrial9.6e-0849.4Show/hide
Query:  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE
        + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG  N+ GGF  F  +  L +LK+ E
Subjt:  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE

F1SZ44 Protein FERTILITY RESTORER RF2, mitochondrial5.6e-0849.4Show/hide
Query:  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE
        + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG  N+ GGF  F  +  L +LK+ E
Subjt:  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG--NWSGGFFFFGFLAFLGFLKDKE

Q0E3V2 Protein YELLOW LEAF 1, choloroplastic1.5e-0844Show/hide
Query:  TCFAALNARCAAEQTQTVTRE------APTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR
        +C A++   C A QTQT  R+      +P    +  K +SP+LDDG +GFPP   G GGGGGGGGG N +GGF  F  +  L +L  +E E   QN  RR
Subjt:  TCFAALNARCAAEQTQTVTRE------APTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR

Arabidopsis top hitse value%identityAlignment
AT1G30475.1 BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1)1.4e-2564Show/hide
Query:  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE
        + V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPRDDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Subjt:  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE

AT1G30475.2 FUNCTIONS IN: molecular_function unknown1.4e-2564Show/hide
Query:  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE
        + V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPRDDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Subjt:  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE

AT1G30475.3 FUNCTIONS IN: molecular_function unknown1.4e-2564Show/hide
Query:  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE
        + V+ S  K   F C +ALN++C+  QTQTVTR++PTIT  P  GK KSP+LDDG +GFPPRDDG GGGGGGGGGG+ SGGFF FGFL F+G+LKD E E
Subjt:  ESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESE

AT1G56200.1 embryo defective 13032.0e-3263.03Show/hide
Query:  LKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAF
        + P+ ++G    +   SR+ +   C +A+NA+C+  QTQTVTRE+PTIT  P   KEKSP LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAF
Subjt:  LKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAF

Query:  LGFLKDKESEGPYQNDRRR
        LG LKDKE E  Y+  RRR
Subjt:  LGFLKDKESEGPYQNDRRR

AT1G56200.2 embryo defective 13032.0e-3263.03Show/hide
Query:  LKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAF
        + P+ ++G    +   SR+ +   C +A+NA+C+  QTQTVTRE+PTIT  P   KEKSP LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAF
Subjt:  LKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAF

Query:  LGFLKDKESEGPYQNDRRR
        LG LKDKE E  Y+  RRR
Subjt:  LGFLKDKESEGPYQNDRRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAAAGGCCAAGAACTTCCATCTAAGAAGGGATAGTTTCCAACTTCAACCTCTTAATGGAAGGATACAACAAGTGGTTGCTAAAGTGGGACCGCTTTTTCTCAAACCAAT
TCCATCTATTGGGACAAGGGAAAGTGTTCTATATTCTAGTAGAAAGACCAACGCTTTCACATGTTTTGCTGCTTTGAATGCTAGATGTGCAGCGGAGCAGACCCAAACAG
TTACAAGAGAGGCTCCCACAATCACTGTTCTTCCTGGCAAGGAGAAGTCACCGCAACTGGATGATGGTGATTCTGGCTTTCCACCTCGTGATGATGGTGATGGCGGTGGG
GGAGGTGGCGGTGGCGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTCGGCTTCCTTGCTTTTCTAGGCTTCTTGAAAGATAAAGAAAGTGAAGGGCCTTATCAGAATGA
TAGGAGAAGA
mRNA sequenceShow/hide mRNA sequence
ACAAAGGCCAAGAACTTCCATCTAAGAAGGGATAGTTTCCAACTTCAACCTCTTAATGGAAGGATACAACAAGTGGTTGCTAAAGTGGGACCGCTTTTTCTCAAACCAAT
TCCATCTATTGGGACAAGGGAAAGTGTTCTATATTCTAGTAGAAAGACCAACGCTTTCACATGTTTTGCTGCTTTGAATGCTAGATGTGCAGCGGAGCAGACCCAAACAG
TTACAAGAGAGGCTCCCACAATCACTGTTCTTCCTGGCAAGGAGAAGTCACCGCAACTGGATGATGGTGATTCTGGCTTTCCACCTCGTGATGATGGTGATGGCGGTGGG
GGAGGTGGCGGTGGCGGAGGCAACTGGTCTGGTGGATTCTTCTTCTTCGGCTTCCTTGCTTTTCTAGGCTTCTTGAAAGATAAAGAAAGTGAAGGGCCTTATCAGAATGA
TAGGAGAAGA
Protein sequenceShow/hide protein sequence
TKAKNFHLRRDSFQLQPLNGRIQQVVAKVGPLFLKPIPSIGTRESVLYSSRKTNAFTCFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGG
GGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGPYQNDRRR