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MS023306 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023306
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold101:557695..558119
RNA-Seq ExpressionMS023306
SyntenyMS023306
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN83427.1 hypothetical protein VITISV_009103 [Vitis vinifera]6.6e-0836.76Show/hide
Query:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSL-LNAPILVLIGDS--LSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRT
        P +AI  G+ +FS +  FIVGDG  + F ED W GD  L   +P  +   +  N PI  ++G S   S+N+ FRR+LSD    D+  L+  L       T
Subjt:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSL-LNAPILVLIGDS--LSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRT

Query:  RVRDIRFRSPSPSKNFYYSSYFSILCRSTLLNGSLF
         V D+R  S   S  F   S+F+ L  S +L+ S F
Subjt:  RVRDIRFRSPSPSKNFYYSSYFSILCRSTLLNGSLF

RVW39477.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.5e-0739.05Show/hide
Query:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYH-SSLLNAPILVLIGDS--LSFNYGFRRSLSDHGSSDV-SLLLFLLATTFYPR
        P +AI L +  FS F  F+VGDG  + F +D W GD PL   +P      +  NAPI  ++G S   S+N+ FRR+L+D    D+ SL+  L+  T+  R
Subjt:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYH-SSLLNAPILVLIGDS--LSFNYGFRRSLSDHGSSDV-SLLLFLLATTFYPR

Query:  TRVRD
         ++RD
Subjt:  TRVRD

RVW60294.1 putative ribonuclease H protein [Vitis vinifera]2.5e-0738.58Show/hide
Query:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSLL---NAPILVLIGDS--LSFNYGFRRSLSDHGSSDVSLLLFLLATTFYP
        P +AI L +  FS F  F+VGDG  + F +D W GD PL   +P     S++   NAPI  ++G S   S+N+ FRR+L+D    D+  L+  L    Y 
Subjt:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSLL---NAPILVLIGDS--LSFNYGFRRSLSDHGSSDVSLLLFLLATTFYP

Query:  RTRVRDIRFRSPSPSKNFYYSSYFSIL
           V D R  S SPS  F   S+F  L
Subjt:  RTRVRDIRFRSPSPSKNFYYSSYFSIL

RVW61143.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]8.6e-0839.05Show/hide
Query:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYH-SSLLNAPILVLIGDS--LSFNYGFRRSLSDHGSSDV-SLLLFLLATTFYPR
        P +AI L +  FS F  F+VGDG  + F +D W GD PL   +P      +  NAPI  ++G S   S+N+ FRR+L+D    D+ SL+  L+  T+  R
Subjt:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYH-SSLLNAPILVLIGDS--LSFNYGFRRSLSDHGSSDV-SLLLFLLATTFYPR

Query:  TRVRD
         ++RD
Subjt:  TRVRD

TYK09969.1 calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]2.0e-0944.86Show/hide
Query:  GDSPLCCLFPSFYH-SSLLN---APILVLIGDSLSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRTRVRDIRFRSPSPSKNFYYSSYFSILCRSTLLNG
        G+ PLC LFP  YH SSL N   A  LV  G+S SF++GFRR+LSD  +S+V  L+ LL +  + R   RD+   SP P + F   S+F  L  ST  + 
Subjt:  GDSPLCCLFPSFYH-SSLLN---APILVLIGDSLSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRTRVRDIRFRSPSPSKNFYYSSYFSILCRSTLLNG

Query:  SLFSLLW
        S+ SL+W
Subjt:  SLFSLLW

TrEMBL top hitse value%identityAlignment
A0A438DVH3 Transposon TX1 uncharacterized 149 kDa protein7.1e-0839.05Show/hide
Query:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYH-SSLLNAPILVLIGDS--LSFNYGFRRSLSDHGSSDV-SLLLFLLATTFYPR
        P +AI L +  FS F  F+VGDG  + F +D W GD PL   +P      +  NAPI  ++G S   S+N+ FRR+L+D    D+ SL+  L+  T+  R
Subjt:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYH-SSLLNAPILVLIGDS--LSFNYGFRRSLSDHGSSDV-SLLLFLLATTFYPR

Query:  TRVRD
         ++RD
Subjt:  TRVRD

A0A438FJW0 Putative ribonuclease H protein1.2e-0738.58Show/hide
Query:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSLL---NAPILVLIGDS--LSFNYGFRRSLSDHGSSDVSLLLFLLATTFYP
        P +AI L +  FS F  F+VGDG  + F +D W GD PL   +P     S++   NAPI  ++G S   S+N+ FRR+L+D    D+  L+  L    Y 
Subjt:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSLL---NAPILVLIGDS--LSFNYGFRRSLSDHGSSDVSLLLFLLATTFYP

Query:  RTRVRDIRFRSPSPSKNFYYSSYFSIL
           V D R  S SPS  F   S+F  L
Subjt:  RTRVRDIRFRSPSPSKNFYYSSYFSIL

A0A438FMD5 Transposon TX1 uncharacterized 149 kDa protein4.2e-0839.05Show/hide
Query:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYH-SSLLNAPILVLIGDS--LSFNYGFRRSLSDHGSSDV-SLLLFLLATTFYPR
        P +AI L +  FS F  F+VGDG  + F +D W GD PL   +P      +  NAPI  ++G S   S+N+ FRR+L+D    D+ SL+  L+  T+  R
Subjt:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYH-SSLLNAPILVLIGDS--LSFNYGFRRSLSDHGSSDV-SLLLFLLATTFYPR

Query:  TRVRD
         ++RD
Subjt:  TRVRD

A0A5D3CI74 Calpain-type cysteine protease DEK19.9e-1044.86Show/hide
Query:  GDSPLCCLFPSFYH-SSLLN---APILVLIGDSLSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRTRVRDIRFRSPSPSKNFYYSSYFSILCRSTLLNG
        G+ PLC LFP  YH SSL N   A  LV  G+S SF++GFRR+LSD  +S+V  L+ LL +  + R   RD+   SP P + F   S+F  L  ST  + 
Subjt:  GDSPLCCLFPSFYH-SSLLN---APILVLIGDSLSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRTRVRDIRFRSPSPSKNFYYSSYFSILCRSTLLNG

Query:  SLFSLLW
        S+ SL+W
Subjt:  SLFSLLW

A5BN97 Reverse transcriptase domain-containing protein3.2e-0836.76Show/hide
Query:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSL-LNAPILVLIGDS--LSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRT
        P +AI  G+ +FS +  FIVGDG  + F ED W GD  L   +P  +   +  N PI  ++G S   S+N+ FRR+LSD    D+  L+  L       T
Subjt:  PVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSL-LNAPILVLIGDS--LSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRT

Query:  RVRDIRFRSPSPSKNFYYSSYFSILCRSTLLNGSLF
         V D+R  S   S  F   S+F+ L  S +L+ S F
Subjt:  RVRDIRFRSPSPSKNFYYSSYFSILCRSTLLNGSLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCAGGAACCTGTGAGAGCTATTCCCCTGGGGTACTTGAATTTCTCGAGCTTTATCACGTTTATTGTCGGGGATGGAGCGTCGGTTTTCTTTAGGGAGGACTATTGGCT
GGGGGATAGTCCCCTCTGTTGCCTCTTTCCTAGTTTTTATCATTCGTCTTTGCTGAATGCGCCTATTCTTGTTCTCATTGGAGATTCCCTATCGTTCAACTATGGTTTCA
GACGTTCATTGTCAGATCATGGGTCTTCAGATGTTTCTTTGCTCTTGTTCTTGCTGGCTACTACTTTTTACCCTCGGACCAGAGTTAGGGATATTCGTTTTCGGTCTCCT
AGCCCATCCAAGAATTTCTATTATAGCTCTTATTTTTCTATTCTTTGTAGGTCGACCCTCCTCAATGGTTCTTTGTTCTCCTTACTTTGG
mRNA sequenceShow/hide mRNA sequence
TTTCAGGAACCTGTGAGAGCTATTCCCCTGGGGTACTTGAATTTCTCGAGCTTTATCACGTTTATTGTCGGGGATGGAGCGTCGGTTTTCTTTAGGGAGGACTATTGGCT
GGGGGATAGTCCCCTCTGTTGCCTCTTTCCTAGTTTTTATCATTCGTCTTTGCTGAATGCGCCTATTCTTGTTCTCATTGGAGATTCCCTATCGTTCAACTATGGTTTCA
GACGTTCATTGTCAGATCATGGGTCTTCAGATGTTTCTTTGCTCTTGTTCTTGCTGGCTACTACTTTTTACCCTCGGACCAGAGTTAGGGATATTCGTTTTCGGTCTCCT
AGCCCATCCAAGAATTTCTATTATAGCTCTTATTTTTCTATTCTTTGTAGGTCGACCCTCCTCAATGGTTCTTTGTTCTCCTTACTTTGG
Protein sequenceShow/hide protein sequence
FQEPVRAIPLGYLNFSSFITFIVGDGASVFFREDYWLGDSPLCCLFPSFYHSSLLNAPILVLIGDSLSFNYGFRRSLSDHGSSDVSLLLFLLATTFYPRTRVRDIRFRSP
SPSKNFYYSSYFSILCRSTLLNGSLFSLLW