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MS023308 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023308
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold101:559067..559258
RNA-Seq ExpressionMS023308
SyntenyMS023308
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA22845.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-1047.69Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P KI+FFVW    G++NT D IQ +    CL P WCVLCK++ E++DH+   C YS ++
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-1047.69Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P KI+FFVW    G++NT D IQ +    CL P WCVLCK++ E++DH+   C YS ++
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
VVA33204.1 PREDICTED: ribonuclease H [Prunus dulcis]6.5e-1146.15Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSA-ACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P K+K FVWQ +LGK+NT D +Q+     C+ PHWC LC +  E +DH+L +C +S ++
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSA-ACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
XP_034223760.1 THO complex subunit 1 isoform X1 [Prunus dulcis]1.1e-1047.69Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P KI+FFVW    G++NT D IQ +    CL P WCVLCK++ E++DH+   C YS ++
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
XP_034223765.1 THO complex subunit 1 isoform X5 [Prunus dulcis]1.1e-1047.69Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P KI+FFVW    G++NT D IQ +    CL P WCVLCK++ E++DH+   C YS ++
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
TrEMBL top hitse value%identityAlignment
M5WDM3 zf-RVT domain-containing protein (Fragment)6.3e-1249.23Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSA-ACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P K+K FVWQ +LGK+NT D +Q+     CL PHWCVLC    E++DH+L  C +S ++
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSA-ACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
M5WKV4 Reverse transcriptase domain-containing protein (Fragment)2.4e-1149.23Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P KI+FFVW    G++NT D IQ +    CL P WCVLCK++ E++DH+   C YS R+
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
M5WPQ5 Reverse transcriptase domain-containing protein2.4e-1149.23Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P KI+FFVW    G++NT D IQ +    CL P WCVLCK++ E++DH+   C YS R+
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
M5X4S0 Reverse transcriptase domain-containing protein (Fragment)1.8e-1149.23Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P KI+FFVW    G++NT D IQ +    CL P WCVLCK++ E++DH+   C YS R+
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
M5XV38 zf-RVT domain-containing protein2.4e-1149.23Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK K P KI+FFVW    G++NT D IQ +    CL P WCVLCK++ E++DH+   C YS R+
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQ-KSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein3.7e-0428.12Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK+ +  KIK F+W+ + G + T  R++  +        C  C  + E + HI++ C Y+Q +
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
AT3G25270.1 Ribonuclease H-like superfamily protein4.3e-0531.25Show/hide
Query:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI
        +WK+K   KIK F+W++L G + T D +++          C  C Q+ E   H+ + C Y+Q++
Subjt:  LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTGGAAAGTGAAGATCCCAAAGAAGATAAAATTTTTCGTGTGGCAGGTCTTACTTGGGAAAGTCAACACCATGGATCGTATTCAAAAAAGCTCGGCCGCTTGCTTGGG
GCCGCATTGGTGCGTTCTTTGTAAGCAGGATTTCGAGGATCTTGATCATATCTTATGGCAGTGCCAATATTCCCAGAGAATT
mRNA sequenceShow/hide mRNA sequence
TTGTGGAAAGTGAAGATCCCAAAGAAGATAAAATTTTTCGTGTGGCAGGTCTTACTTGGGAAAGTCAACACCATGGATCGTATTCAAAAAAGCTCGGCCGCTTGCTTGGG
GCCGCATTGGTGCGTTCTTTGTAAGCAGGATTTCGAGGATCTTGATCATATCTTATGGCAGTGCCAATATTCCCAGAGAATT
Protein sequenceShow/hide protein sequence
LWKVKIPKKIKFFVWQVLLGKVNTMDRIQKSSAACLGPHWCVLCKQDFEDLDHILWQCQYSQRI