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MS023310 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023310
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold101:565023..565484
RNA-Seq ExpressionMS023310
SyntenyMS023310
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN62051.1 hypothetical protein VITISV_016641 [Vitis vinifera]2.5e-2437.25Show/hide
Query:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG
        PP+   K +W ++VP K+K F+W +AH+ LNT D LQ +    ++ P+ C LC+K  ET+DHLFLHC+L +  W  +F    M    P+ + +       
Subjt:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG

Query:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
        G G       LW     A+MW +W ERN R+F+D + +   LW +I+  AS W
Subjt:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

RVW70235.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.9e-2436.77Show/hide
Query:  IQPPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQA
        + PP+   K +W  +VP K+K F+W +AH+ +NT D LQ +    ++ P  C LC+K  ET+DHLFLHC+L    W  +F    M    P+ + + L   
Subjt:  IQPPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQA

Query:  IGGSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
          G GF      LW     A+MW +W ERN R+F+D + +   LW +I    S W
Subjt:  IGGSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

RVW79087.1 putative ribonuclease H protein [Vitis vinifera]2.5e-2437.25Show/hide
Query:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG
        PP+   K +W ++VP K+K F+W +AH+ LNT D LQ +    ++ P+ C LC+K  ET+DHLFLHC+L +  W  +F    M    P+ + +       
Subjt:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG

Query:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
        G G       LW     A+MW +W ERN R+F+D + +   LW +I+  AS W
Subjt:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

RVW92607.1 putative ribonuclease H protein [Vitis vinifera]2.5e-2437.25Show/hide
Query:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG
        PP+   K +W ++VP K+K F+W +AH+ LNT D LQ +    ++ P+ C LC+K  ET+DHLFLHC+L +  W  +F    M    P+ + +       
Subjt:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG

Query:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
        G G       LW     A+MW +W ERN R+F+D + +   LW +I+  AS W
Subjt:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

RVX23716.1 putative ribonuclease H protein [Vitis vinifera]2.5e-2437.25Show/hide
Query:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG
        PP+   K +W ++VP K+K F+W +AH+ LNT D LQ +    ++ P+ C LC+K  ET+DHLFLHC+L +  W  +F    M    P+ + +       
Subjt:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG

Query:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
        G G       LW     A+MW +W ERN R+F+D + +   LW +I+  AS W
Subjt:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

TrEMBL top hitse value%identityAlignment
A0A438EZ36 LINE-1 retrotransposable element ORF2 protein1.2e-2437.25Show/hide
Query:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG
        PP+   K +W ++VP K+K F+W +AH+ LNT D LQ +    ++ P+ C LC+K  ET+DHLFLHC+L +  W  +F    M    P+ + +       
Subjt:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG

Query:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
        G G       LW     A+MW +W ERN R+F+D + +   LW +I+  AS W
Subjt:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

A0A438GDE7 LINE-1 retrotransposable element ORF2 protein9.2e-2536.77Show/hide
Query:  IQPPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQA
        + PP+   K +W  +VP K+K F+W +AH+ +NT D LQ +    ++ P  C LC+K  ET+DHLFLHC+L    W  +F    M    P+ + + L   
Subjt:  IQPPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQA

Query:  IGGSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
          G GF      LW     A+MW +W ERN R+F+D + +   LW +I    S W
Subjt:  IGGSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

A0A438I7G2 Putative ribonuclease H protein1.2e-2437.25Show/hide
Query:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG
        PP+   K +W ++VP K+K F+W +AH+ LNT D LQ +    ++ P+ C LC+K  ET+DHLFLHC+L +  W  +F    M    P+ + +       
Subjt:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG

Query:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
        G G       LW     A+MW +W ERN R+F+D + +   LW +I+  AS W
Subjt:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

A5C377 Uncharacterized protein1.2e-2437.25Show/hide
Query:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG
        PP+   K +W ++VP K+K F+W +AH+ LNT D LQ +    ++ P+ C LC+K  ET+DHLFLHC+L +  W  +F    M    P+ + +       
Subjt:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG

Query:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
        G G       LW     A+MW +W ERN R+F+D + +   LW +I+  AS W
Subjt:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

F6H108 WD_REPEATS_REGION domain-containing protein1.2e-2437.25Show/hide
Query:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG
        PP+   K +W ++VP K+K F+W +AH+ LNT D LQ +    ++ P+ C LC+K  ET+DHLFLHC+L +  W  +F    M    P+ + +       
Subjt:  PPLI--KKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIG

Query:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW
        G G       LW     A+MW +W ERN R+F+D + +   LW +I+  AS W
Subjt:  GSGFKNAKGTLWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCAACCCCCCCTTATCAAGAAGATTTGGAAGACAAAGGTCCCTAAGAAGATTAAAGTCTTTCTTTGGTCGATGGCTCACCGCAGTTTAAACACTCAGGACCGCCTTCA
AAGGAAGTGCAATACTTGGAGCATGCTTCCCTCTGCATGCCCCTTGTGCCTTAAGGCAGAAGAGACCATCGATCACTTATTTCTCCACTGCACACTTGCCAGAAATTGTT
GGTCCCTAGTCTTTTGCCATTTCAACATGAGCCTTTTTCTCCCGCAACGAGTAGATGAGTGGCTTCTTCAAGCCATAGGGGGTAGCGGATTCAAAAATGCCAAAGGAACC
TTGTGGACTCTCGTGGTGGCAGCAGTTATGTGGAACCTTTGGCTAGAACGAAACAAAAGACTCTTTGATGATTCTTCTTTAGATTTTCACGTTTTGTGGAGTAATATTCA
GCTAACTGCTTCTAGGTGGTGT
mRNA sequenceShow/hide mRNA sequence
ATCCAACCCCCCCTTATCAAGAAGATTTGGAAGACAAAGGTCCCTAAGAAGATTAAAGTCTTTCTTTGGTCGATGGCTCACCGCAGTTTAAACACTCAGGACCGCCTTCA
AAGGAAGTGCAATACTTGGAGCATGCTTCCCTCTGCATGCCCCTTGTGCCTTAAGGCAGAAGAGACCATCGATCACTTATTTCTCCACTGCACACTTGCCAGAAATTGTT
GGTCCCTAGTCTTTTGCCATTTCAACATGAGCCTTTTTCTCCCGCAACGAGTAGATGAGTGGCTTCTTCAAGCCATAGGGGGTAGCGGATTCAAAAATGCCAAAGGAACC
TTGTGGACTCTCGTGGTGGCAGCAGTTATGTGGAACCTTTGGCTAGAACGAAACAAAAGACTCTTTGATGATTCTTCTTTAGATTTTCACGTTTTGTGGAGTAATATTCA
GCTAACTGCTTCTAGGTGGTGT
Protein sequenceShow/hide protein sequence
IQPPLIKKIWKTKVPKKIKVFLWSMAHRSLNTQDRLQRKCNTWSMLPSACPLCLKAEETIDHLFLHCTLARNCWSLVFCHFNMSLFLPQRVDEWLLQAIGGSGFKNAKGT
LWTLVVAAVMWNLWLERNKRLFDDSSLDFHVLWSNIQLTASRWC