CuGenDBv2

Gene ID	MS023314
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	scaffold101:590787..590900
RNA-Seq Expression	MS023314
Synteny	MS023314
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ARD02137.1 RNA polymerase beta subunit [Purshia tridentata]

2.3e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

QGZ07999.1 RNA polymerase beta [Prunus davidiana]

2.3e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

QTX96628.1 RNA polymerase beta' subunit [Agrimonia pilosa var. nepalensis]

2.3e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

YP_009413015.1 RNA polymerase beta [Broussonetia papyrifera]

2.3e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

YP_009684770.1 RNA polymerase beta [Allium praemixtum]

2.3e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

TrEMBL top hits

e value

%identity

Alignment

A0A4D6EUR7 DNA-directed RNA polymerase subunit beta'

1.1e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

A0A4D6UXW4 DNA-directed RNA polymerase subunit beta'

1.1e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

A0A5C2IDQ2 DNA-directed RNA polymerase subunit beta'

1.1e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

A0A650CZ30 DNA-directed RNA polymerase subunit beta'

1.1e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

E3W0I4 DNA-directed RNA polymerase subunit beta'

1.1e-11

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

SwissProt top hits

e value

%identity

Alignment

A6MMB3 DNA-directed RNA polymerase subunit beta'

3.0e-14

94.74

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCDV
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

A9LYH6 DNA-directed RNA polymerase subunit beta'

8.6e-14

94.59

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCD
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCD
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCD

Q2VEI5 DNA-directed RNA polymerase subunit beta'

3.9e-14

92.11

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCD+
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

Q3V543 DNA-directed RNA polymerase subunit beta'

8.6e-14

94.59

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCD
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCD
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCD

Q5QA71 DNA-directed RNA polymerase subunit beta'

8.6e-14

94.59

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCD
        KLACPVTHV YLK LPSYIANLLDKPLKELEGLVYCD
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCD

Arabidopsis top hits

e value

%identity

Alignment

ATCG00180.1 DNA-directed RNA polymerase family protein

1.8e-14

91.89

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Query:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCD
        KL CPVTHV YLK LPSYIANLLDKPLKELEGLVYCD
Subjt:  KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCD

Sequences

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CDS sequence

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AAACTGGCATGCCCAGTAACCCATGTGTTGTATTTGAAACATCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGA
TGTG

mRNA sequence

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AAACTGGCATGCCCAGTAACCCATGTGTTGTATTTGAAACATCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGA
TGTG

Protein sequence

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KLACPVTHVLYLKHLPSYIANLLDKPLKELEGLVYCDV

MS023314 (gene) of Bitter gourd (TR) v1 genome