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MS023321 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023321
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II CP43 reaction center protein
Genome locationscaffold101:846900..847010
RNA-Seq ExpressionMS023321
SyntenyMS023321
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0010242 - oxygen evolving activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5755341.1 putative photosystem antenna protein [Helianthus annuus]1.7e-0881.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        +FVGHLWHAR A AA A FEKGIDHDFEPVL +TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
KAF9611280.1 hypothetical protein IFM89_028704 [Coptis chinensis]3.0e-0881.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGIDHD EPVLF+TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
PHU02759.1 Photosystem II CP43 reaction center protein [Capsicum chinense]3.0e-0880.56Show/hide
Query:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        F+GHLWHA  AHAA A  EKGIDHD EPVLFITPLN
Subjt:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
YP_009751902.1 photosystem II 43 kDa protein [Cyclanthera pedata]5.1e-0881.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
YP_009916736.1 photosystem II CP43 chlorophyll apoprotein [Primula pulchella]5.1e-0881.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
TrEMBL top hitse value%identityAlignment
A0A218KG40 Photosystem II CP43 reaction center protein2.4e-0881.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
A0A251RP41 Putative photosystem antenna protein-like protein8.4e-0981.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        +FVGHLWHAR A AA A FEKGIDHDFEPVL +TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
A0A2G3B8F9 Photosystem II CP43 reaction center protein1.4e-0880.56Show/hide
Query:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        F+GHLWHA  AHAA A  EKGIDHD EPVLFITPLN
Subjt:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
A0A6B9TV55 Photosystem II CP43 reaction center protein2.4e-0881.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
A0A6M3RWB3 Photosystem II CP43 reaction center protein2.4e-0881.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
SwissProt top hitse value%identityAlignment
A1XFV1 Photosystem II CP43 reaction center protein1.9e-1080.56Show/hide
Query:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        FVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
B1A931 Photosystem II CP43 reaction center protein3.3e-1078.38Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGID D EPVLF+TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
Q2QD93 Photosystem II CP43 reaction center protein6.6e-1181.08Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
Q2VEI0 Photosystem II CP43 reaction center protein1.9e-1080.56Show/hide
Query:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        FVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
Q6EW52 Photosystem II CP43 reaction center protein1.9e-1080.56Show/hide
Query:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        FVGHLWHA  A AA A FEKGID DFEPVLF+TPLN
Subjt:  FVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
Arabidopsis top hitse value%identityAlignment
ATCG00280.1 photosystem II reaction center protein C4.0e-1178.38Show/hide
Query:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN
        LFVGHLWHA  A AA A FEKGID DFEPVL +TPLN
Subjt:  LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTTCGTAGGTCATTTATGGCATGCAAGAGGGGCTCATGCAGCTATCGCAAGATTTGAAAAAGGAATTGATCATGATTTTGAACCTGTTCTTTTCATAACTCCTCTTAA
C
mRNA sequenceShow/hide mRNA sequence
TTGTTCGTAGGTCATTTATGGCATGCAAGAGGGGCTCATGCAGCTATCGCAAGATTTGAAAAAGGAATTGATCATGATTTTGAACCTGTTCTTTTCATAACTCCTCTTAA
C
Protein sequenceShow/hide protein sequence
LFVGHLWHARGAHAAIARFEKGIDHDFEPVLFITPLN