; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS023327 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS023327
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontrafficking protein particle complex subunit 2
Genome locationscaffold378:27489..30396
RNA-Seq ExpressionMS023327
SyntenyMS023327
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA0344446.1 unnamed protein product [Arabidopsis thaliana]1.6e-6382.91Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTA--VYSSSYFLLCQCSCWFFFDYSLH
        MA TACFIIV RNDIPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTA  +   SY ++  C   FF + S H
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTA--VYSSSYFLLCQCSCWFFFDYSLH

Query:  TRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        TRLMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  TRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

CDY13092.1 BnaA09g17250D [Brassica napus]2.7e-6382.05Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MA TACF+IV+RNDIPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTAV+     L+C     FF + + HTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        LMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRITS+HFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

KAF7840160.1 trafficking protein particle complex subunit 2 [Senna tora]1.5e-6482.69Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MATTACFIIVSRNDIPIYE+EVG+A KRED+AQLHQFILHA+LDIVQDLAWTTSAM+LK++DRFNDLVVSVYVTAVY           C  F D S+HTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
         MLLHDSRNDDGIKSFFQEVHELYIK +LNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

KAG6604699.1 Trafficking protein particle complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]3.2e-6485.9Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MATTACFIIVSRN+IPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTA                     LHTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

XP_022157725.1 transport protein particle 20 kDa subunit [Momordica charantia]9.4e-6485.9Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTA                      HTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

TrEMBL top hitse value%identityAlignment
A0A078FJE5 BnaA09g17250D protein1.3e-6382.05Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MA TACF+IV+RNDIPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTAV+     L+C     FF + + HTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        LMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRITS+HFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

A0A3P5YGS0 Uncharacterized protein1.3e-6382.05Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MA TACF+IV+RNDIPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTAV+     L+C     FF + + HTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        LMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRITS+HFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

A0A654ESB3 (thale cress) hypothetical protein7.8e-6482.91Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTA--VYSSSYFLLCQCSCWFFFDYSLH
        MA TACFIIV RNDIPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTA  +   SY ++  C   FF + S H
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTA--VYSSSYFLLCQCSCWFFFDYSLH

Query:  TRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        TRLMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  TRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

A0A6J1DTW9 transport protein particle 20 kDa subunit4.6e-6485.9Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTA                      HTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

M4EFK4 Uncharacterized protein1.3e-6382.05Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MA TACF+IV+RNDIPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTAV+     L+C     FF + + HTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        LMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRITS+HFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

SwissProt top hitse value%identityAlignment
E2QV03 Trafficking protein particle complex subunit 24.3e-2740.88Show/hide
Query:  MATTACFIIVSRNDIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSL
        M+ +  F+IV  +D P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTA                      
Subjt:  MATTACFIIVSRNDIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSL

Query:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S I SS FD KV+ L +K+L
Subjt:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

F1SRI0 Trafficking protein particle complex subunit 24.3e-2740.88Show/hide
Query:  MATTACFIIVSRNDIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSL
        M+ +  F+IV  +D P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTA                      
Subjt:  MATTACFIIVSRNDIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSL

Query:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S I SS FD KV+ L +K+L
Subjt:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

P0DI81 Trafficking protein particle complex subunit 25.6e-2740.88Show/hide
Query:  MATTACFIIVSRNDIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSL
        M+ +  F+IV  +D P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTA                      
Subjt:  MATTACFIIVSRNDIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSL

Query:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S I SS FD KV+ L +K+L
Subjt:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

Q3T0F2 Trafficking protein particle complex subunit 24.3e-2740.88Show/hide
Query:  MATTACFIIVSRNDIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSL
        M+ +  F+IV  +D P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+LK VD+FN+  VS +VTA                      
Subjt:  MATTACFIIVSRNDIPIYEAE---VGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSL

Query:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S I SS FD KV+ L +K+L
Subjt:  HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

Q9USZ5 Transport protein particle 20 kDa subunit8.6e-2841.03Show/hide
Query:  TACFIIVSRNDIPIYEAEVGSAAKRED---SAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        TA   I+   D P+YE E+G   ++ D   ++ L+QFI+H+SLDIV  L WT++A ++K +D+F+++ +S YVT                       + R
Subjt:  TACFIIVSRNDIPIYEAEVGSAAKRED---SAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
         MLLH +++ D IK FFQE+HELYIKT+++P Y P   I S  FD KVR++AR+YL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL

Arabidopsis top hitse value%identityAlignment
AT1G80500.1 SNARE-like superfamily protein3.4e-6480.13Show/hide
Query:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR
        MA TACFIIV RNDIPIYEAEVGSAAKRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+VDRFNDLVVSVYVTA                      HTR
Subjt:  MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTR

Query:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
        LMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRITSSHFDTKVRALARKYL
Subjt:  LMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACTGCTTGTTTCATCATCGTCAGTAGGAACGATATCCCCATTTATGAAGCTGAAGTTGGATCCGCTGCTAAAAGAGAGGATTCTGCTCAGCTTCATCAGTT
TATATTGCATGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTATATGTAA
CCGCTGTATATAGTTCTTCTTATTTCCTTTTGTGCCAATGTTCTTGTTGGTTTTTCTTTGACTATTCACTACATACACGATTAATGTTACTTCATGACTCTCGCAATGAT
GATGGAATCAAGAGCTTTTTTCAAGAGGTTCATGAGCTCTATATAAAGACTATACTAAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAA
AGTCCGTGCGCTCGCAAGGAAGTATCTC
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCACTGCTTGTTTCATCATCGTCAGTAGGAACGATATCCCCATTTATGAAGCTGAAGTTGGATCCGCTGCTAAAAGAGAGGATTCTGCTCAGCTTCATCAGTT
TATATTGCATGCGTCCCTTGACATTGTTCAAGACCTGGCATGGACTACTAGTGCTATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTATATGTAA
CCGCTGTATATAGTTCTTCTTATTTCCTTTTGTGCCAATGTTCTTGTTGGTTTTTCTTTGACTATTCACTACATACACGATTAATGTTACTTCATGACTCTCGCAATGAT
GATGGAATCAAGAGCTTTTTTCAAGAGGTTCATGAGCTCTATATAAAGACTATACTAAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAA
AGTCCGTGCGCTCGCAAGGAAGTATCTC
Protein sequenceShow/hide protein sequence
MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAVYSSSYFLLCQCSCWFFFDYSLHTRLMLLHDSRND
DGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL