CuGenDBv2

Gene ID	MS023337
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small nuclear ribonucleoprotein Sm D1
Genome location	scaffold378:168118..168279
RNA-Seq Expression	MS023337
Synteny	MS023337
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0016020 - membrane (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0034715 - pICln-Sm protein complex (cellular component) GO:0000243 - commitment complex (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005682 - U5 snRNP (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3

Homology

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GenBank top hits

e value

%identity

Alignment

GER26534.1 phenazine biosynthesis protein [Striga asiatica]

7.4e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

KAG6571478.1 Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia]

9.6e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

XP_011079832.1 small nuclear ribonucleoprotein Sm D1-like isoform X1 [Sesamum indicum]

7.4e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

XP_011082549.1 small nuclear ribonucleoprotein Sm D1 [Sesamum indicum]

7.4e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

XP_022963993.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata]

9.6e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

TrEMBL top hits

e value

%identity

Alignment

A0A3L6QC34 Small nuclear ribonucleoprotein Sm D1

4.7e-08

62.26

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Query:  CRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        CRFLMKLNNETV+IELKNGTVVHGTITG+ +S N ++  +   L   NP  +D
Subjt:  CRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

A0A5A7P1V2 Phenazine biosynthesis protein

3.6e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

A0A6I9T6Z3 Small nuclear ribonucleoprotein Sm D1

3.6e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

A0A6I9TCF6 Small nuclear ribonucleoprotein Sm D1

3.6e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D1

4.7e-08

64.81

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

SwissProt top hits

e value

%identity

Alignment

O42661 Small nuclear ribonucleoprotein Sm D1

1.3e-07

63.41

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCI
        L RFLMKL NETVSIELKNGT+VHGTIT + +  N ++  +
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCI

P62314 Small nuclear ribonucleoprotein Sm D1

2.9e-07

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFL
        L RFLMKL++ETV+IELKNGT VHGTITG+ +S N ++  +   L
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFL

Q3ZC10 Small nuclear ribonucleoprotein Sm D1

2.9e-07

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFL
        L RFLMKL++ETV+IELKNGT VHGTITG+ +S N ++  +   L
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFL

Q9SSF1 Small nuclear ribonucleoprotein SmD1a

4.8e-10

62.96

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

Q9SY09 Small nuclear ribonucleoprotein SmD1b

4.8e-10

61.11

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGT+VHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

Arabidopsis top hits

e value

%identity

Alignment

AT3G07590.1 Small nuclear ribonucleoprotein family protein

3.4e-11

62.96

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

AT3G07590.2 Small nuclear ribonucleoprotein family protein

3.4e-11

62.96

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

AT4G02840.1 Small nuclear ribonucleoprotein family protein

3.4e-11

61.11

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGT+VHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

AT4G02840.2 Small nuclear ribonucleoprotein family protein

9.3e-09

51.56

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Query:  LCRFLMKLNNETVSIELKNGTVVHGTIT----------GLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGT+VHGTIT          G+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTIT----------GLHLSFNHNMLCINTFLILLNPRIMD

Sequences

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CDS sequence

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CTGTGCAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACCGTTGTCCATGGCACTATCACAGGTCTCCATCTCTCTTTCAATCACAA
CATGCTTTGCATAAACACTTTCTTGATCCTGTTAAACCCTAGAATTATGGAC

mRNA sequence

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CTGTGCAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACCGTTGTCCATGGCACTATCACAGGTCTCCATCTCTCTTTCAATCACAA
CATGCTTTGCATAAACACTTTCTTGATCCTGTTAAACCCTAGAATTATGGAC

Protein sequence

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LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD

MS023337 (gene) of Bitter gourd (TR) v1 genome